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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c7y7rB_

Fold library idPDB HeaderMoleculeTitle
c7y7rB_2.10PDB header: rna binding proteinChain: B: PDB Molecule: rna-dependent rna polymerase;


Added to library: Sat Oct 1 12:05:10 2022
 
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 1........10.........20.........30.........40.........50.........60.........70
Sequence AALRNIWPKFPKWHEAPLAVAWEVTRFMHKVDSLGLKYDPSTARDVTDIEKPPNDVFVTAMTGNFESKGS
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Known secondary structure (DSSP)



S
S







S


















SSTTT




TSTTTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence AVVLSAVLDYNPDNSPLYLVKLKPLMFEQGCRLTRRFGPDRFFEILIPSPTSSPSVPPVSKQAVEEVIQW
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Known secondary structure (DSSP)
S










GGG
TT

TTS






 .........150.........160.........170.........180.........190.........200.........210
Sequence LTMGQHSLVGRQWRAFFAKDAGYRKPPIIKERVHFFAETGITFRPDEPVEQRTEFKVSQMLDWLLQLDNN
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Known secondary structure (DSSP) TS
TT


SS
B



SSS
B



GGG
 .........220.........230.........240.........250.........260.........270.........280
Sequence TWQPHLKLFSRIQLGLSKTYAIMTLEPHQIRHHKTDLLSPSGTGEVMNDGVGRMSRSVAKRIRDVLGLGD
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Known secondary structure (DSSP) TTSBTT




GGG
SS

B
TTSS

BSSTT
T
SS
 .........290.........300.........310.........320.........330.........340.........350
Sequence VPSAVQGRFGSAKGMWVIDVDDTGDEDWIETYPSQRKWECDFVDKHQRTLEVRSVASELKSAGLNLQLLP
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Known secondary structure (DSSP)

STT
TT

S




GGGBSS




SGGGS







B
TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence VLEDRARDKVKMRQAIGDRLINDLQRQFSEQKHALNRPVEFRQWVYESYSSRATRVSHGRVPFLAGLPDS
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Known secondary structure (DSSP) TBSSTSS

TS

TTSS
 .........430.........440.........450.........460.........470.........480.........490
Sequence QEETLNFLMNSGFDPKKQKYLQDIAWDLQKRKCDTLKSKLNIRVGRSAYIYMIADFWGVLEENEVHVGFS
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Known secondary structure (DSSP) TT

TTTBS

B

SS
TT

S
TT
 .........500.........510.........520.........530.........540.........550.........560
Sequence SKFRDEESFTLLSDCDVLVARSPAHFPSDIQRVRAVFKPELHSLKDVIIFSTKGDVPLAKKLSGGDYDGD
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Known secondary structure (DSSP)



S
SS

SGGG


GGGTT

S
S
SSS
TTS

SSS
 .........570.........580.........590.........600.........610.........620.........630
Sequence MAWVCWDPEIVDGFVNAEMPLEPDLSRYLKKDKTTFKQLMASHGTGSAAKEQTTYDMIQKSFHFALQPNF
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Known secondary structure (DSSP)

TTB










TTT



BTT
SS


 .........640.........650.........660.........670.........680.........690.........700
Sequence LGMCTNYKERLCYINNSVSNKPAIILSSLVGNLVDQSKQGIVFNEASWAQLRRELLGGALSLPDPMYKSD
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Known secondary structure (DSSP) T
SSSTTT

S
TT





GGGSS
 .........710.........720.........730.........740.........750.........760.........770
Sequence SWLGRGEPTHIIDYLKFSIARPAIDKELEAFHNMKAADGAHFWDPDLASYYTFFKEISDKSRSSALLFTT
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Known secondary structure (DSSP) S

SSSS

ST







BS

GGGG
 .........780.........790.........800.........810.........820.........830.........840
Sequence LKNRIGEVEKEYGRLVKKEDPYPVRVNQVYEKWCAITPSKVIRLLELSFLADREMNTWALLRASTAFKLY
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Known secondary structure (DSSP) T









TT
S
GGGS
 .........850.........860.........870.........880.........890.......
Sequence YHKSPKFVWQMAGRQLAYIKAQMTSRPGEGAPALMTAFMYAGLMPDKKFTKQYVARL
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Known secondary structure (DSSP) TTTST

TTS






T





Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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