PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c7w13A_

Fold library id	PDB Header	Molecule	Title
c7w13A_	1.65	PDB header: lyase	Chain: A: PDB Molecule: alginate lyase;

Links to external resources
Added to library: Sat Aug 20 08:52:56 2022

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence R R P P W D I A R F R P A L R V A K L Q A P D S V Q R K D V R S F P N F Q A D H F Y S E N R D M V F V M G G D S Q R S E L R F L D E W S V R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
G G G S G G G T
T T T
S S
B
T T
B T T B S T T
S T T
S
B
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T S S T R R M V G V L T L P T P L R G M K H F T W M Q V A G G S K G K K P L L R L S W H D K R E Q L R N T M L A T V R L N N K S G D A G R F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T
S
S
S
G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K K I V L G T R P S G R F V A D V R V E R S R L T V R L N G R K L V D E D V G Y W T Y S T N Y F K A G V Y V Q E G S P D A R V V F H G L T V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T T T
T T
S
B
S S

.

Sequence S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	R	R	P	P	W	D	I	A	R	F	R	P	A	L	R	V	A	K	L	Q	A	P	D	S	V	Q	R	K	D	V	R	S	F	P	N	F	Q	A	D	H	F	Y	S	E	N	R	D	M	V	F	V	M	G	G	D	S	Q	R	S	E	L	R	F	L	D	E	W	S	V	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		B		G	G	G	S	G	G	G						T							T	T	T		S	S		B				T	T			B	T	T			B	S	T	T								S	T	T								S			B		T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	S	S	T	R	R	M	V	G	V	L	T	L	P	T	P	L	R	G	M	K	H	F	T	W	M	Q	V	A	G	G	S	K	G	K	K	P	L	L	R	L	S	W	H	D	K	R	E	Q	L	R	N	T	M	L	A	T	V	R	L	N	N	K	S	G	D	A	G	R	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S															T	T																	S		S																						S					G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	K	I	V	L	G	T	R	P	S	G	R	F	V	A	D	V	R	V	E	R	S	R	L	T	V	R	L	N	G	R	K	L	V	D	E	D	V	G	Y	W	T	Y	S	T	N	Y	F	K	A	G	V	Y	V	Q	E	G	S	P	D	A	R	V	V	F	H	G	L	T	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S	S										T	T							T	T									T	T				S		B												S	S
	.
Sequence	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)