PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c7vbwA_

Fold library id	PDB Header	Molecule	Title
c7vbwA_	2.50	PDB header: transcription	Chain: A: PDB Molecule: sigma-54 dependent trancsriptional regulator;

Links to external resources
Added to library: Sat Dec 18 09:16:14 2021

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence H S E S M Q A L L H E V D T F A D C D T N V L L H G E T G V G K E R I A Q L L H E K H S R Y R H G E F V P V N C G A I P D G L F E S L F F G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S S
T T S S S T T G G G S
G G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence H A A H K G Y F E Q A A G G T L F L D E V G D L P L Y Q Q V K L L R V L E D G A V L R V G A T A P V K V D F R L V A A S N K K L P Q L V K E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B
B
T T T S T G G G S
B T
S S
S S
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence G L F R A D L Y Y R L A V I E L S I P S L E E R G A V D K I A L F K S F V A Q V V G E E R L A E L S D L P Y W L T D S V A D S Y F P G N V R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S
S
T S
T S
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . .

Sequence E L R N L A E R V G V T V R Q T G G W D A A R L Q R L I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	H	S	E	S	M	Q	A	L	L	H	E	V	D	T	F	A	D	C	D	T	N	V	L	L	H	G	E	T	G	V	G	K	E	R	I	A	Q	L	L	H	E	K	H	S	R	Y	R	H	G	E	F	V	P	V	N	C	G	A	I	P	D	G	L	F	E	S	L	F	F	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																S	S	S	S									T	T	S	S												S	T	T	G	G	G	S							G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	H	A	A	H	K	G	Y	F	E	Q	A	A	G	G	T	L	F	L	D	E	V	G	D	L	P	L	Y	Q	Q	V	K	L	L	R	V	L	E	D	G	A	V	L	R	V	G	A	T	A	P	V	K	V	D	F	R	L	V	A	A	S	N	K	K	L	P	Q	L	V	K	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	B			B							T	T	T	S						T	G	G	G	S																				B	T		S	S													S	S								T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	G	L	F	R	A	D	L	Y	Y	R	L	A	V	I	E	L	S	I	P	S	L	E	E	R	G	A	V	D	K	I	A	L	F	K	S	F	V	A	Q	V	V	G	E	E	R	L	A	E	L	S	D	L	P	Y	W	L	T	D	S	V	A	D	S	Y	F	P	G	N	V	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	S	S										S																																			T	S													T	S			T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Sequence	E	L	R	N	L	A	E	R	V	G	V	T	V	R	Q	T	G	G	W	D	A	A	R	L	Q	R	L	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T	S