PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c7rdnA_

Fold library id	PDB Header	Molecule	Title
c7rdnA_	2.49	PDB header: nuclear protein	Chain: A: PDB Molecule: pre-mrna leakage protein 39;

Links to external resources
Added to library: Sat Jul 30 08:33:04 2022

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence R L H D L R A L L K R I C S I Q N Y T R H V L I E W D V R W V N P L T L A S K G W E P Y Q S A S Q S Q V P F K C C C C H A I M T I P L L K V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T S
S S S S S T T
S
S S T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A D Y T M K L N E K I W N S N I I G N H L Q K C P W R E N Q V D L N K E Y Y L S S Q N L I R E I E R I H T E I D R I V S F H Y L S E K E I Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S T T T T T S
T T
T S
T T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K L A F F F D C K D Y S L V G L L L L G Y T K F Q K D D L V Q C T A C F H R A S L K K L E Y T E F N G H A L W C R Y Y N K E L L P T M L L E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
T T
S S S S S S S
S S
S
T T S T T S S T T

. . . . .

Sequence L I G K E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	R	L	H	D	L	R	A	L	L	K	R	I	C	S	I	Q	N	Y	T	R	H	V	L	I	E	W	D	V	R	W	V	N	P	L	T	L	A	S	K	G	W	E	P	Y	Q	S	A	S	Q	S	Q	V	P	F	K	C	C	C	C	H	A	I	M	T	I	P	L	L	K	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T																	T	T	S						S	S	S	S	S							T	T					S				S	S							T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	D	Y	T	M	K	L	N	E	K	I	W	N	S	N	I	I	G	N	H	L	Q	K	C	P	W	R	E	N	Q	V	D	L	N	K	E	Y	Y	L	S	S	Q	N	L	I	R	E	I	E	R	I	H	T	E	I	D	R	I	V	S	F	H	Y	L	S	E	K	E	I	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	S												T	T	T	T	T	S		T	T														T	S			T	T	T																					S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	L	A	F	F	F	D	C	K	D	Y	S	L	V	G	L	L	L	L	G	Y	T	K	F	Q	K	D	D	L	V	Q	C	T	A	C	F	H	R	A	S	L	K	K	L	E	Y	T	E	F	N	G	H	A	L	W	C	R	Y	Y	N	K	E	L	L	P	T	M	L	L	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T		S										T	T					S	S	S	S					S	S	S										S	S						S		T	T	S	T	T	S	S	T	T
	.	.	.	.	.
Sequence	L	I	G	K	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T