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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7pu7A_

Fold library idPDB HeaderMoleculeTitle
c7pu7A_2.90PDB header: replicationChain: A: PDB Molecule: dna polymerase iii subunit alpha;


Added to library: Sat Feb 26 08:49:56 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GSSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIKPIIGVEAYI
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Known secondary structure (DSSP)




B

B
BTTSTTT

B
TT
SS

TTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence APGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSHASFEGQLSKWSRMDAELIA
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Known secondary structure (DSSP)
SS
SS






S
TT

TTSSTB
S
TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence EHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVGPDNYFLELMDHGLTIERRVRDGLLEIGRA
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Known secondary structure (DSSP) T
SSS
STTST

GGG


S
 .........220.........230.........240.........250.........260.........270.........280
Sequence LNIPPLATNDCHYVTRDAAHNHEALLCVQTGKTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDST
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Known secondary structure (DSSP) T




BSSSSGGG


SS
TTS



SS

S


TTSTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence LLIAERVQSYADVWTPRDRMPVFPVPDGHDQASWLRHEVDAGLRRRFPAGPPDGYRERAAYEIDVICSKG
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Known secondary structure (DSSP)




GGGS


B






TT

STT


TTTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence FPSYFLIVADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMPDIDIDF
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Known secondary structure (DSSP)
T

B
S

TTGGG
TS

S
T

S
SSS





 .........430.........440.........450.........460.........470.........480.........490
Sequence DDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKALPPAIMAKDIPL
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Known secondary structure (DSSP) TTT
SSSB



GGGTTS


SSS



T
 .........500.........510.........520.........530.........540.........550.........560
Sequence SGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHACAVIMSSEPLTEAIPLWKRPQD
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Known secondary structure (DSSP) GGGG
SSSTTGGGG
S
S

SS
SS
GGGTS

TTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence GAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAIDNVRANRGIDLDLESVPLDDKATYELLGRGDTLGV
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Known secondary structure (DSSP)

SS
TTBSS




GGG

TT
T

TTS
 .........640.........650.........660.........670.........680.........690.........700
Sequence FQLDGGPMRDLLRRMQPTGFEDVVAVIALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAE
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Known secondary structure (DSSP) TT

S


STSSTTTTTTT
TTSS



SSGGGTTTTSSTTTT
 .........710.........720.........730.........740.........750.........760.........770
Sequence TYGLIVYQEQIMRIAQKVASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTIL
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Known secondary structure (DSSP) TTT


B


T



T
 .........780.........790.........800.........810.........820.........830.........840
Sequence PFADYAFNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVNES
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Known secondary structure (DSSP) TTSSS
B
STSS
TTT



SSS
 .........850.........860.........870.........880.........890.........900.........910
Sequence GLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISACNKKVTESLIKAGAFDS
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Known secondary structure (DSSP)
SS
TT

GGGSTT

S



S

GGG

TTTTT
 .........920.........930.........940.........950.........960.........970.........980
Sequence LGHARKGLFLVHSDAVDSVLGTKKFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTA
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Known secondary structure (DSSP) TT













SS

S

TTTTT
SS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence IPAILDGDVPNDAQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVL
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Known secondary structure (DSSP) T
S
SS


TT




SS



GGG

SS
 .........1060.........1070
Sequence VNAKVAVRDDRIALIANDLT
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Known secondary structure (DSSP) TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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