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Protein Homology/analogY Recognition Engine V 2.2 |
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Fold library id | PDB Header | Molecule | Title |
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c7oopV_ | 2.90 | PDB header: transcription | Chain: V: PDB Molecule: rna polymerase ii-associated factor 1 homolog; |
Added to library: Sat Oct 9 09:35:49 2021 | |
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Links to external resources | |
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  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 |
Sequence | E | R | S | G | V | V | C | R | V | K | Y | C | N | S | L | P | D | I | P | F | D | P | K | F | I | T | Y | P | F | D | Q | N | R | F | V | Q | Y | K | A | T | S | L | E | K | Q | H | K | H | D | L | L | T | E | P | D | L | G | V | T | I | D | L | I | N | P | D | T | Y | R | I |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | S | S | S | S | T | ![]() | ![]() | ![]() | ![]() | ![]() | T | S | S | S | T | T | T | S | S | S | S | S | T | T |   | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 |
Sequence | D | P | N | V | L | L | D | P | A | D | E | K | L | L | E | E | E | I | Q | K | D | R | D | S | Q | I | T | A | I | E | K | T | F | E | D | A | Q | K | S | I | S | Q | H | Y | S | K | P | R | V | T | P | V | E | V | M | P | V | S | Q | A | M | I | R | G | M | M | D | E | E | G |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | S | S | S | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | S | S | S | S | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | S | S | S | S | T | T | ![]() | ![]() | T | T | T |   | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 |
Sequence | N | Q | F | V | A | Y | F | L | P | V | E | E | T | L | K | K | R | K | R | D | Q | E | E | E | M | D | Y | A | P | D | D | V | Y | D | Y | K | I | A | R | E | Y | N | W | N | V | K | N | K | A | S | K | F | F | I | F | R | E | G | D | G | V | Y | Y | N | E | L | E | T | R | V |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | S | S | T | T | T | T | S | S | S | S | S | ![]() | ![]() | S | S | S | S | S | S | S | ![]() | ![]() | S | S | S | B | B | ![]() | ![]() | S | T | T | ![]() | ![]() | S |   | . | . | . | . | . | . | . | |||||||||||||||||||||||||||
Sequence | R | L | S | K | R | R | A | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | ![]() | ![]() | B |
Download: | PDB structure | FASTA sequence |
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