PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c7obaB_

Fold library id	PDB Header	Molecule	Title
c7obaB_	3.10	PDB header: transcription	Chain: B: PDB Molecule: dna-directed rna polymerase i subunit rpa2;

Links to external resources
Added to library: Sat Dec 11 08:57:54 2021

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M D P G S R W R N L P S G P S L K H L T D P S Y G I P R E Q Q K A A L Q E L T R A H V E S F N Y A V H E G L G L A V Q A I P P F E F A F K D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S
T T
S S
T T S S S S S T T S
S S
T T T S S S S T T T T S S S S S
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E R I S F T I L D A V I S P P T V P K G T I C K E A N V Y P A E C R G R R S T Y R G K L T A D I N W A V N G I S K G I I K Q F L G Y V P I M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
B
T T
S
B
T T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V K S K L C N L R N L P P Q A L I E H H E E A E E M G G Y F I I N G I E K V I R M L I M P R R N F P I A M I R P K W K T R G P G Y T Q Y G V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S S S T T T T
T T T
S S
T T
B S S
G G G G G S S S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence S M H C V R E E H S A V N M N L H Y L E N G T V M L N F I Y R K E L F F L P L G F A L K A L V S F S D Y Q I F Q E L I K G K E D D S F L R N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T S
S S S
B
T S S S
S
S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence S V S Q M L R I V M E E G C S T Q K Q V L N Y L G E C F R V K L N V P D W Y P N E Q A A E F L F N Q C I C I H L K S N T E K F Y M L C L M T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S T S T T T T
T T
T T T T T T T T S
T T
S

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence R K L F A L A K G E C M E D N P D S L V N Q E V L T P G Q L F L M F L K E K L E G W L V S I K I A F D K K A Q K T S V S M N T D N L M R I F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S
S S S G G G
T T T T T
S S
T T

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence T M G I D L T K P F E Y L F A T G N L R S K T G L G L L Q D S G L C V V A D K L N F I R Y L S H F R C V H R G A D F A K M R T T T V R R L L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S
T T
S S
T T
S
S S
S S T T S S
S S T T S S
S G G G S

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence P E S W G F L C P V H T P D G E P C G L M N H L T A V C E V V T Q F V Y T A S I P A L L C N L G V T P I D G A P H R S Y S E C Y P V L L D G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G T T T B
S S
S
S S T T T T T B
S S
S T T S S S
S S
T T S T T

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence V M V G W V D K D L A P G I A D S L R H F K V L R E K R I P P W M E V V L I P M T G K P S L Y P G L F L F T T P C R L V R P V Q N L A L G K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S S T T T T T T T T T
T T
T T
S S S
S
S S
T T T T

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence E E L I G T M E Q I F M N V A I F E D E V F A G V T T H Q E L F P H S L L S V I A N F I P F S D H N Q S P R N M Y Q C Q M G K Q T M G F P L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T G G G T
S S S T T
S S S
S S T T T T S
S S T T T T T S
T T T T T S B

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence L T Y Q D R S D N K L Y R L Q T P Q S P L V R P S M Y D Y Y D M D N Y P I G T N A I V A V I S Y T G Y D M E D A M I V N K A S W E R G F A H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T T
S S S
S
T T T T T S S
S S S
S S T T T

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence G S V Y K S E F I D L S E K I K Q G D S S L V F G I K P G D P R V L Q K L D D D G L P F I G A K L Q Y G D P Y Y S Y L N L N T G E S F V M Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S S
S S T T
T T
G G G T T T B
T T S S B
S S
T T
T T T
B

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence Y K S K E N C V V D N I K V C S N D T G S G K F K C V C I T M R V P R N P T I G D K F A S R H G Q K G I L S R L W P A E D M P F T E S G M V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S S
S
T T
S S S
G G G S
B S S S

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence P D I L F N P H G F P S R M T I G M L I E S M A G K S A A L H G L C H D A T P F I F S E E N S A L E Y F G E M L K A A G Y N F Y G T E R L Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S S S T T T
T T T T
T T
S S S
S S S S T T S
T T S
B

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . . . . . 1030 . . . . . . . . . 1040 . . . . . . . . . 1050

Sequence S G I S G L E L E A D I F I G V V Y Y Q R L R H M V S D K F Q V R T T G A R D R V T N Q P I G I R F G E M E R D A L L A H G T S F L L H D R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
S
S S
B S
S S
B
S S S
S B
T

. . . . . . . . . 1060 . . . . . . . . . 1070 . . . . . . . . . 1080 . . . . . . . . . 1090 . . . . . . . . . 1100 . . . . . . . . . 1110 . . . . . . . . . 1120

Sequence L F N C S D R S V A H V C V K C G S L L S P L L E K P P P S W S A M R N R K Y N C T L C S R S D T I D T V S V P Y V F R Y F V A E L A A M N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S T T T
S S
B
T T S S S S
B T T T T B
S
T T T T T T

. . . . . . .

Sequence I K V K L D V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group,
Imperial College,
London
Michael Sternberg
Disclaimer

Terms and Conditions

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	D	P	G	S	R	W	R	N	L	P	S	G	P	S	L	K	H	L	T	D	P	S	Y	G	I	P	R	E	Q	Q	K	A	A	L	Q	E	L	T	R	A	H	V	E	S	F	N	Y	A	V	H	E	G	L	G	L	A	V	Q	A	I	P	P	F	E	F	A	F	K	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	S	S		T	T			S	S				T	T	S	S	S	S	S	T	T	S			S	S			T	T	T	S	S	S	S										T	T	T					T	S	S	S	S	S								S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	R	I	S	F	T	I	L	D	A	V	I	S	P	P	T	V	P	K	G	T	I	C	K	E	A	N	V	Y	P	A	E	C	R	G	R	R	S	T	Y	R	G	K	L	T	A	D	I	N	W	A	V	N	G	I	S	K	G	I	I	K	Q	F	L	G	Y	V	P	I	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S															B			T	T				S			B									T	T																T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	K	S	K	L	C	N	L	R	N	L	P	P	Q	A	L	I	E	H	H	E	E	A	E	E	M	G	G	Y	F	I	I	N	G	I	E	K	V	I	R	M	L	I	M	P	R	R	N	F	P	I	A	M	I	R	P	K	W	K	T	R	G	P	G	Y	T	Q	Y	G	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	S	S	S	S	T	T	T	T								T	T	T			S	S									T	T													B	S	S							G	G	G	G	G	S	S	S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	S	M	H	C	V	R	E	E	H	S	A	V	N	M	N	L	H	Y	L	E	N	G	T	V	M	L	N	F	I	Y	R	K	E	L	F	F	L	P	L	G	F	A	L	K	A	L	V	S	F	S	D	Y	Q	I	F	Q	E	L	I	K	G	K	E	D	D	S	F	L	R	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T	T											T	T	S								S	S	S						B																				T	S	S	S			S		S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	S	V	S	Q	M	L	R	I	V	M	E	E	G	C	S	T	Q	K	Q	V	L	N	Y	L	G	E	C	F	R	V	K	L	N	V	P	D	W	Y	P	N	E	Q	A	A	E	F	L	F	N	Q	C	I	C	I	H	L	K	S	N	T	E	K	F	Y	M	L	C	L	M	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	T			S												T	S	T	T	T	T			T	T			T	T	T	T	T	T	T					T	S		T	T		S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	R	K	L	F	A	L	A	K	G	E	C	M	E	D	N	P	D	S	L	V	N	Q	E	V	L	T	P	G	Q	L	F	L	M	F	L	K	E	K	L	E	G	W	L	V	S	I	K	I	A	F	D	K	K	A	Q	K	T	S	V	S	M	N	T	D	N	L	M	R	I	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	S	S					S	S	S	G	G	G						T	T																											T	T	T							S	S				T	T
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	T	M	G	I	D	L	T	K	P	F	E	Y	L	F	A	T	G	N	L	R	S	K	T	G	L	G	L	L	Q	D	S	G	L	C	V	V	A	D	K	L	N	F	I	R	Y	L	S	H	F	R	C	V	H	R	G	A	D	F	A	K	M	R	T	T	T	V	R	R	L	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	S	S			T	T															S	S		T	T		S		S	S									S	S						T	T	S	S						S	S	T	T	S	S			S	G	G	G	S
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	P	E	S	W	G	F	L	C	P	V	H	T	P	D	G	E	P	C	G	L	M	N	H	L	T	A	V	C	E	V	V	T	Q	F	V	Y	T	A	S	I	P	A	L	L	C	N	L	G	V	T	P	I	D	G	A	P	H	R	S	Y	S	E	C	Y	P	V	L	L	D	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G	T	T	T	B		S	S		S		S	S	T	T	T	T	T				B		S	S											S									T	T				S	S	S			S	S		T	T	S							T	T
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	V	M	V	G	W	V	D	K	D	L	A	P	G	I	A	D	S	L	R	H	F	K	V	L	R	E	K	R	I	P	P	W	M	E	V	V	L	I	P	M	T	G	K	P	S	L	Y	P	G	L	F	L	F	T	T	P	C	R	L	V	R	P	V	Q	N	L	A	L	G	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	T	S					S	T	T	T	T	T	T	T	T	T		T	T			T	T										S	S	S		S										S	S									T	T	T	T
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	E	E	L	I	G	T	M	E	Q	I	F	M	N	V	A	I	F	E	D	E	V	F	A	G	V	T	T	H	Q	E	L	F	P	H	S	L	L	S	V	I	A	N	F	I	P	F	S	D	H	N	Q	S	P	R	N	M	Y	Q	C	Q	M	G	K	Q	T	M	G	F	P	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T	G	G	G	T					S	S	S	T	T			S	S	S						S	S	T	T	T	T	S						S	S	T	T	T	T	T	S									T	T	T	T	T	S	B
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	L	T	Y	Q	D	R	S	D	N	K	L	Y	R	L	Q	T	P	Q	S	P	L	V	R	P	S	M	Y	D	Y	Y	D	M	D	N	Y	P	I	G	T	N	A	I	V	A	V	I	S	Y	T	G	Y	D	M	E	D	A	M	I	V	N	K	A	S	W	E	R	G	F	A	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S		T	T	T				S						S	S					S				T					T	T	T	T	S	S														S	S	S			S	S												T	T	T
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	G	S	V	Y	K	S	E	F	I	D	L	S	E	K	I	K	Q	G	D	S	S	L	V	F	G	I	K	P	G	D	P	R	V	L	Q	K	L	D	D	D	G	L	P	F	I	G	A	K	L	Q	Y	G	D	P	Y	Y	S	Y	L	N	L	N	T	G	E	S	F	V	M	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S	S	S	S			S	S	T	T								T	T		G	G	G	T	T	T	B		T	T	S	S	B		S	S					T	T									T	T	T			B
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	Y	K	S	K	E	N	C	V	V	D	N	I	K	V	C	S	N	D	T	G	S	G	K	F	K	C	V	C	I	T	M	R	V	P	R	N	P	T	I	G	D	K	F	A	S	R	H	G	Q	K	G	I	L	S	R	L	W	P	A	E	D	M	P	F	T	E	S	G	M	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S													S	S	S				S															T	T						S	S	S											G	G	G	S			B	S	S	S
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	P	D	I	L	F	N	P	H	G	F	P	S	R	M	T	I	G	M	L	I	E	S	M	A	G	K	S	A	A	L	H	G	L	C	H	D	A	T	P	F	I	F	S	E	E	N	S	A	L	E	Y	F	G	E	M	L	K	A	A	G	Y	N	F	Y	G	T	E	R	L	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S					S	S	S	S	T	T	T			T														T	T	T							T	T				S	S	S		S	S	S	S								T	T	S		T	T	S				B
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050
Sequence	S	G	I	S	G	L	E	L	E	A	D	I	F	I	G	V	V	Y	Y	Q	R	L	R	H	M	V	S	D	K	F	Q	V	R	T	T	G	A	R	D	R	V	T	N	Q	P	I	G	I	R	F	G	E	M	E	R	D	A	L	L	A	H	G	T	S	F	L	L	H	D	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S	S		S			S	S												B	S											S	S			B		S	S	S		S	B																	T
	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120
Sequence	L	F	N	C	S	D	R	S	V	A	H	V	C	V	K	C	G	S	L	L	S	P	L	L	E	K	P	P	P	S	W	S	A	M	R	N	R	K	Y	N	C	T	L	C	S	R	S	D	T	I	D	T	V	S	V	P	Y	V	F	R	Y	F	V	A	E	L	A	A	M	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	S	S								T	T	T			S	S		B							T	T	S	S	S	S							B	T	T	T	T	B		S									T	T									T	T	T	T
	.	.	.	.	.	.	.
Sequence	I	K	V	K	L	D	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)