PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c7ob9A_

Fold library id	PDB Header	Molecule	Title
c7ob9A_	2.70	PDB header: transcription	Chain: A: PDB Molecule: dna-directed rna polymerase i subunit rpa1;

Links to external resources
Added to library: Sat Dec 11 08:53:19 2021

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S K N M P W R R L Q G I S F G M Y S A E E L K K L S V K S I T N P R Y L D S L G N P S A N G L Y D L A L G P A D S K E V C S T C V Q D F S N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B S
B
T T S S B
S S B T T
T T S
S S T T
S S S
T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence C S G H L G H I E L P L T V Y N P L L F D K L Y L L L R G S C L N C H M L T C P R A V I H L L L C Q L R V L E V G A L Q A V Y E L E R I L N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S T B
S S S
B
S
T T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence R F L E E N P D P S A S E I R E E L E Q Y T T E I V Q N N L L G S Q G A H V K N V C E S K S K L I A L F W K A H M N A K R C P H C K T G R S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S
S S
S T T S T T
S T
T T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence V V R K E H N S K L T I T F P A G Y L T P T S A R E H L S A L W K N E G F F L N Y L F S G M D D D G M E S R F N P S V F F L D F L V V P P S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
S S T T
S S
S
G G G G
G

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence R Y R P V S R L G D Q M F T N G Q T V N L Q A V M K D V V L I R K L L A L M A Q E Q K I D R S F L S T L P G Q S L I D K L Y N I W I R L Q S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G S
S S
T T S
S
S S S

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence H V N I V F D S E M D K L M M D K Y P G I R Q I L E K K E G L F R K H M M G K R V D Y A A R S V I C P D M Y I N T N E I G I P M V F A T K L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
S
S
S S T T S S T S S
S S
S S S
T T T T

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence T Y P Q P V T P W N V Q E L R Q A V I N G P N V H P G A S M V I N E D G S R T A L S A V D M T Q R E A V A K Q L L T P A T G A P K P Q G T K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
T T S S S
T T S
S S
T T
S S S
S

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence I V C R H V K N G D I L L L N R Q P T L H R P S I Q A H R A R I L P E E K V L R L H Y A N C K A Y N A D F D G D E M N A H F P Q S E L G R A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S
S G G G S S
S
G G G T
S S S
S

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence E A Y V L A C T D Q Q Y L V P K D G Q P L A G L I Q D H M V S G A S M T T R G C F F T R E H Y M E L V Y R G L T D K V G R V K L L S P S I L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S B G G G
B
T T T S
B
T S T T
S T T
S S
S B

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence K P F P L W T G K Q V V S T L L I N I I P E D H I P L N L S G K A K I T G K A W V K E T P R S V P G F N P D S M C E S Q V I I R E G E L L C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S
B T T S
T T S
S S
G G G S
S
T T
G G G S
T T S T T

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence G V L D K A H Y G S S A Y G L V H C C Y E I Y G G E T S G K V L T C L A R L F T A Y L Q L Y R G F T L G V E D I L V K P K A D V K R Q R I I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S T T T T S S
T T S S
T
S T T T
B

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence E E S T H C G P Q A V R A A L N L P E A A S Y D E V R G K W Q D A H L G K D Q R D F N M I D L K F K E E V N H Y S N E I N K A C M P F G L H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S T
T T
T T
S S
S S S S S B S

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence R Q F P E N S L Q M M V Q S G A K G S T V N T M Q I S C L L G Q I E L E G R R P P L M A S G K S L P C F E P Y E F T P R A G G F V T G R F L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T T
T T S S
T
B
B T T B
T T S
S S T T S
T T
S G G G G T B
B T T

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence T G I K P P E F F F H C M A G R E G L V D T A V K T S R S G Y L Q R C I I K H L E G L V V Q Y D L T V R D S D G S V V Q F L Y G E D G L D I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T B
T T
S S S
T T S
S S G G G T
B
G

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . . . . . 1030 . . . . . . . . . 1040 . . . . . . . . . 1050

Sequence P K T Q F L Q P K Q F P F L A S N Y E V I M K S Q H L H E V L S R A D P K K A L H H F R A I K K W Q S K H P N T L L R R G A F L S Y S Q K I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G S T T
S T T T T T T T
T T S S
S S S
S
S S S
T T

. . . . . . . . . 1060 . . . . . . . . . 1070 . . . . . . . . . 1080 . . . . . . . . . 1090 . . . . . . . . . 1100 . . . . . . . . . 1110 . . . . . . . . . 1120

Sequence Q E A V K A L K L E S E N R N G R S P G T Q E M L R M W Y E L D E E S R R K Y Q K K A A A C P D P S L S V W R P D I Y F A S V S E T F E T K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T S
S S S
T S
S S S T T
S
T T T S T T

. . . . . . . . . 1130 . . . . . . . . . 1140 . . . . . . . . . 1150 . . . . . . . . . 1160 . . . . . . . . . 1170 . . . . . . . . . 1180 . . . . . . . . . 1190

Sequence V D D Y S Q E W A A Q T E K S Y E K S E L S L D R L R T L L Q L K W Q R S L C E P G E A V G L L A A Q S I G E P S T Q M T L N T F H F A G R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S
S
T B
T T
T G G G G
S
T T

. . . . . . . . . 1200 . . . . . . . . . 1210 . . . . . . . . . 1220 . . . . . . . . . 1230 . . . . . . . . . 1240 . . . . . . . . . 1250 . . . . . . . . . 1260

Sequence G E M N V T L G I P R L R E I L M V A S A N I K T P M M S V P V L N T K K A L K R V K S L K K Q L T R V C L G E V L Q K I D V Q E S F C M E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
T T
S S
S S
B
S
S
B

. . . . . . . . . 1270 . . . . . . . . . 1280 . . . . . . . . . 1290 . . . . . . . . . 1300 . . . . . . . . . 1310 . . . . . . . . . 1320 . . . . . . . . . 1330

Sequence E K Q N K F Q V Y Q L R F Q F L P H A Y Y Q Q E K C L R P E D I L R F M E T R F F K L L M E S I K K K N N K E R R V Q A V R E I H P F I D D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S
G G G S T T T
T
T T
S S

. . . . . . . . . 1340 . . . . . . . . . 1350 . . . . . . . . . 1360 . . . . . . . . . 1370 . . . . . . . . . 1380 . . . . . . . . . 1390 . . . . . . . . . 1400

Sequence Y Q Y D T E E S L W C Q V T V K L P L M K I N F D M S S L V V S L A H G A V I Y A T K G I T R C L L N E T T N N K N E K E L V L N T E G I N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
S S
B S S
T T
S S S

. . . . . . . . . 1410 . . . . . . . . . 1420 . . . . . . . . . 1430 . . . . . . . . . 1440 . . . . . . . . . 1450 . . . . . . . . . 1460 . . . . . . . . . 1470

Sequence L P E L F K Y A E V L D L R R L Y S N D I H A I A N T Y G I E A A L R V I E K E I K D V F A V Y G I A V D P R H L S L V A D Y M C F E G V Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G T T S
T T T B
G G G
S
T
T T T T
T T T S S

. . . . . . . . . 1480 . . . . . . . . . 1490 . . . . . . . . . 1500 . . . . . . . . . 1510 . . . . . . . . . 1520 . . . . . . . . . 1530 . . . . .

Sequence K P L N R F G I R S N S S P L Q Q M T F E T S F Q F L K Q A T M L G S H D E L R S P S A C L V V G K V V R G G T G L F E L K Q P L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T T G G G
S
S
T
S
S T T
S S S T T S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group,
Imperial College,
London
Michael Sternberg
Disclaimer

Terms and Conditions

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	K	N	M	P	W	R	R	L	Q	G	I	S	F	G	M	Y	S	A	E	E	L	K	K	L	S	V	K	S	I	T	N	P	R	Y	L	D	S	L	G	N	P	S	A	N	G	L	Y	D	L	A	L	G	P	A	D	S	K	E	V	C	S	T	C	V	Q	D	F	S	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																B	S			B		T	T	S	S	B		S	S	B	T	T		T	T	S			S	S	T	T				S	S	S				T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	C	S	G	H	L	G	H	I	E	L	P	L	T	V	Y	N	P	L	L	F	D	K	L	Y	L	L	L	R	G	S	C	L	N	C	H	M	L	T	C	P	R	A	V	I	H	L	L	L	C	Q	L	R	V	L	E	V	G	A	L	Q	A	V	Y	E	L	E	R	I	L	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T	T	S										T	B		S	S	S			B		S																	T	T		T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	R	F	L	E	E	N	P	D	P	S	A	S	E	I	R	E	E	L	E	Q	Y	T	T	E	I	V	Q	N	N	L	L	G	S	Q	G	A	H	V	K	N	V	C	E	S	K	S	K	L	I	A	L	F	W	K	A	H	M	N	A	K	R	C	P	H	C	K	T	G	R	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S	S		S			S	S													S	T	T	S	T	T			S																		T							T	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	V	V	R	K	E	H	N	S	K	L	T	I	T	F	P	A	G	Y	L	T	P	T	S	A	R	E	H	L	S	A	L	W	K	N	E	G	F	F	L	N	Y	L	F	S	G	M	D	D	D	G	M	E	S	R	F	N	P	S	V	F	F	L	D	F	L	V	V	P	P	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T	T																																						S	S	T	T			S	S		S		G	G	G	G										G
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	R	Y	R	P	V	S	R	L	G	D	Q	M	F	T	N	G	Q	T	V	N	L	Q	A	V	M	K	D	V	V	L	I	R	K	L	L	A	L	M	A	Q	E	Q	K	I	D	R	S	F	L	S	T	L	P	G	Q	S	L	I	D	K	L	Y	N	I	W	I	R	L	Q	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	S						S	S																													T	T	S												S			S	S	S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	H	V	N	I	V	F	D	S	E	M	D	K	L	M	M	D	K	Y	P	G	I	R	Q	I	L	E	K	K	E	G	L	F	R	K	H	M	M	G	K	R	V	D	Y	A	A	R	S	V	I	C	P	D	M	Y	I	N	T	N	E	I	G	I	P	M	V	F	A	T	K	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	T			S			S										S	S	T	T	S	S					T	S	S				S	S										S	S	S		T	T										T	T
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	T	Y	P	Q	P	V	T	P	W	N	V	Q	E	L	R	Q	A	V	I	N	G	P	N	V	H	P	G	A	S	M	V	I	N	E	D	G	S	R	T	A	L	S	A	V	D	M	T	Q	R	E	A	V	A	K	Q	L	L	T	P	A	T	G	A	P	K	P	Q	G	T	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	S												T	T	S	S	S								T	T	S							S	S												T	T					S	S	S			S
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	I	V	C	R	H	V	K	N	G	D	I	L	L	L	N	R	Q	P	T	L	H	R	P	S	I	Q	A	H	R	A	R	I	L	P	E	E	K	V	L	R	L	H	Y	A	N	C	K	A	Y	N	A	D	F	D	G	D	E	M	N	A	H	F	P	Q	S	E	L	G	R	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T								S	S			S	G	G	G										S	S			S					G	G	G					T			S	S	S										S
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	E	A	Y	V	L	A	C	T	D	Q	Q	Y	L	V	P	K	D	G	Q	P	L	A	G	L	I	Q	D	H	M	V	S	G	A	S	M	T	T	R	G	C	F	F	T	R	E	H	Y	M	E	L	V	Y	R	G	L	T	D	K	V	G	R	V	K	L	L	S	P	S	I	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	S	B	G	G	G			B		T	T	T	S		B																T	S	T	T																S	T	T		S	S								S	B
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	K	P	F	P	L	W	T	G	K	Q	V	V	S	T	L	L	I	N	I	I	P	E	D	H	I	P	L	N	L	S	G	K	A	K	I	T	G	K	A	W	V	K	E	T	P	R	S	V	P	G	F	N	P	D	S	M	C	E	S	Q	V	I	I	R	E	G	E	L	L	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S	S		B													T	T	S		T	T	S										S	S		G	G	G	S			S						T	T			G	G	G	S		T	T	S					T	T
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	G	V	L	D	K	A	H	Y	G	S	S	A	Y	G	L	V	H	C	C	Y	E	I	Y	G	G	E	T	S	G	K	V	L	T	C	L	A	R	L	F	T	A	Y	L	Q	L	Y	R	G	F	T	L	G	V	E	D	I	L	V	K	P	K	A	D	V	K	R	Q	R	I	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S			S	T	T	T	T	S	S		T	T	S									S																							T							S	T	T	T		B
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	E	E	S	T	H	C	G	P	Q	A	V	R	A	A	L	N	L	P	E	A	A	S	Y	D	E	V	R	G	K	W	Q	D	A	H	L	G	K	D	Q	R	D	F	N	M	I	D	L	K	F	K	E	E	V	N	H	Y	S	N	E	I	N	K	A	C	M	P	F	G	L	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T		S									T			T	T														T	T		S	S		S																									S	S	S	S	B	S
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	R	Q	F	P	E	N	S	L	Q	M	M	V	Q	S	G	A	K	G	S	T	V	N	T	M	Q	I	S	C	L	L	G	Q	I	E	L	E	G	R	R	P	P	L	M	A	S	G	K	S	L	P	C	F	E	P	Y	E	F	T	P	R	A	G	G	F	V	T	G	R	F	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S		T	T	T									T	T	S	S											T				B			B	T	T	B						T	T	S		S	S	T	T	S		T	T			S	G	G	G	G	T	B				B	T	T
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	T	G	I	K	P	P	E	F	F	F	H	C	M	A	G	R	E	G	L	V	D	T	A	V	K	T	S	R	S	G	Y	L	Q	R	C	I	I	K	H	L	E	G	L	V	V	Q	Y	D	L	T	V	R	D	S	D	G	S	V	V	Q	F	L	Y	G	E	D	G	L	D	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	B																																							T	T					S	S	S					T	T	S					S	S	G	G	G	T		B		G
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050
Sequence	P	K	T	Q	F	L	Q	P	K	Q	F	P	F	L	A	S	N	Y	E	V	I	M	K	S	Q	H	L	H	E	V	L	S	R	A	D	P	K	K	A	L	H	H	F	R	A	I	K	K	W	Q	S	K	H	P	N	T	L	L	R	R	G	A	F	L	S	Y	S	Q	K	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	S	T	T		S	T	T	T						T	T						T	T		T	T	S	S		S	S	S																					S		S	S	S											T	T
	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120
Sequence	Q	E	A	V	K	A	L	K	L	E	S	E	N	R	N	G	R	S	P	G	T	Q	E	M	L	R	M	W	Y	E	L	D	E	E	S	R	R	K	Y	Q	K	K	A	A	A	C	P	D	P	S	L	S	V	W	R	P	D	I	Y	F	A	S	V	S	E	T	F	E	T	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S					T	S							S	S	S														T	S		S	S	S							T	T											S		T	T	T	S	T	T
	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190
Sequence	V	D	D	Y	S	Q	E	W	A	A	Q	T	E	K	S	Y	E	K	S	E	L	S	L	D	R	L	R	T	L	L	Q	L	K	W	Q	R	S	L	C	E	P	G	E	A	V	G	L	L	A	A	Q	S	I	G	E	P	S	T	Q	M	T	L	N	T	F	H	F	A	G	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															S	S	S			S																	T	B			T	T													T	G	G	G	G			S							T	T
	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260
Sequence	G	E	M	N	V	T	L	G	I	P	R	L	R	E	I	L	M	V	A	S	A	N	I	K	T	P	M	M	S	V	P	V	L	N	T	K	K	A	L	K	R	V	K	S	L	K	K	Q	L	T	R	V	C	L	G	E	V	L	Q	K	I	D	V	Q	E	S	F	C	M	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	S															T	T			S	S		S	S							B		S																S			B
	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330
Sequence	E	K	Q	N	K	F	Q	V	Y	Q	L	R	F	Q	F	L	P	H	A	Y	Y	Q	Q	E	K	C	L	R	P	E	D	I	L	R	F	M	E	T	R	F	F	K	L	L	M	E	S	I	K	K	K	N	N	K	E	R	R	V	Q	A	V	R	E	I	H	P	F	I	D	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S	S															G	G	G	S	T	T	T															T																								T	T		S	S
	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400
Sequence	Y	Q	Y	D	T	E	E	S	L	W	C	Q	V	T	V	K	L	P	L	M	K	I	N	F	D	M	S	S	L	V	V	S	L	A	H	G	A	V	I	Y	A	T	K	G	I	T	R	C	L	L	N	E	T	T	N	N	K	N	E	K	E	L	V	L	N	T	E	G	I	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	T														S	S																B	S	S			T	T												S	S	S
	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.	.	.	.	.	.	.	1470
Sequence	L	P	E	L	F	K	Y	A	E	V	L	D	L	R	R	L	Y	S	N	D	I	H	A	I	A	N	T	Y	G	I	E	A	A	L	R	V	I	E	K	E	I	K	D	V	F	A	V	Y	G	I	A	V	D	P	R	H	L	S	L	V	A	D	Y	M	C	F	E	G	V	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G	T	T	S		T	T	T	B		G	G	G				S									T																		T	T	T	T																T	T	T	S	S
	.	.	.	.	.	.	.	.	.	1480	.	.	.	.	.	.	.	.	.	1490	.	.	.	.	.	.	.	.	.	1500	.	.	.	.	.	.	.	.	.	1510	.	.	.	.	.	.	.	.	.	1520	.	.	.	.	.	.	.	.	.	1530	.	.	.	.	.
Sequence	K	P	L	N	R	F	G	I	R	S	N	S	S	P	L	Q	Q	M	T	F	E	T	S	F	Q	F	L	K	Q	A	T	M	L	G	S	H	D	E	L	R	S	P	S	A	C	L	V	V	G	K	V	V	R	G	G	T	G	L	F	E	L	K	Q	P	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S	T	T	T	G	G	G		S									S													T					S		S							T	T				S	S	S	T	T	S