PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c7o4jQ_

Fold library id	PDB Header	Molecule	Title
c7o4jQ_	2.90	PDB header: transcription	Chain: Q: PDB Molecule: transcription initiation factor iif subunit alpha;

Links to external resources
Added to library: Sat Jun 19 08:23:02 2021

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N A S P F I K R D R M R R N F L R M R D P N E Y N E F P L R A I P K E D L E N M R T H L L K F Q S K K K I N P V T D F H L P V R L H R K D T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
S
S
G G G T T T
S S S
T T T T S
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R N L Q F Q L T R A E I V Q R Q K E I S E Y K K L R R K T R Q L K V L D E N A K K L R F E E F Y P W V M E D F D G Y N T W V G S Y E A G N S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T S S
S
T S S
S S S S
T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence D S Y V L L S V E D D G S F T M I P A D K V Y K F T A R N K Y A T L T I D E A E K R M D K K S G E V P R W L M K H L D N I G T T T T R Y D R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
T T S
S S S
S T T S S S
T T S
S

. . . . . . . . . 220 .

Sequence T R R K L K A V A D Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	A	S	P	F	I	K	R	D	R	M	R	R	N	F	L	R	M	R	D	P	N	E	Y	N	E	F	P	L	R	A	I	P	K	E	D	L	E	N	M	R	T	H	L	L	K	F	Q	S	K	K	K	I	N	P	V	T	D	F	H	L	P	V	R	L	H	R	K	D	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S				T	T												S		S										G	G	G	T	T	T										S	S	S				T	T	T	T	S		S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	N	L	Q	F	Q	L	T	R	A	E	I	V	Q	R	Q	K	E	I	S	E	Y	K	K	L	R	R	K	T	R	Q	L	K	V	L	D	E	N	A	K	K	L	R	F	E	E	F	Y	P	W	V	M	E	D	F	D	G	Y	N	T	W	V	G	S	Y	E	A	G	N	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T	T	S	S																						S																		T	S	S							S	S	S	S										T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	D	S	Y	V	L	L	S	V	E	D	D	G	S	F	T	M	I	P	A	D	K	V	Y	K	F	T	A	R	N	K	Y	A	T	L	T	I	D	E	A	E	K	R	M	D	K	K	S	G	E	V	P	R	W	L	M	K	H	L	D	N	I	G	T	T	T	T	R	Y	D	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S								T	T	S																	S	S	S													S	T	T	S	S	S			T	T									S		S
	.	.	.	.	.	.	.	.	.	220	.
Sequence	T	R	R	K	L	K	A	V	A	D	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T