PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c7ktrJ_

Fold library id	PDB Header	Molecule	Title
c7ktrJ_	2.93	PDB header: transcription	Chain: J: PDB Molecule: transcriptional adapter 1;

Links to external resources
Added to library: Sat Nov 13 08:29:02 2021

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S V R Q K F D H R F Q P Q N P L S G A Q Q F V A K D P Q D D D D L K L C S H T M M L P T R G Q L E G R M I V T A Y E H G L D N V T E E A V S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G S S S
S S T T
S S
T T T S S S
T T S
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A V V Y A V E N H L K D I L T S V V S R R K A Y R L R D G H F K Y A F G S N V T P Q P Y L K N S V V A Y N N L I E S P P P P P D D A E Q Q A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
B T T T B
S S S
T T S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A L L L A C S G D T L P A S L P P V N M Y D L F E A L Q V H R E V I P T H T V Y A L N I E R I I T K L W H P N H E E L Q Q D K V H R Q R L A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S
T T

. . . .

Sequence A K E G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	V	R	Q	K	F	D	H	R	F	Q	P	Q	N	P	L	S	G	A	Q	Q	F	V	A	K	D	P	Q	D	D	D	D	L	K	L	C	S	H	T	M	M	L	P	T	R	G	Q	L	E	G	R	M	I	V	T	A	Y	E	H	G	L	D	N	V	T	E	E	A	V	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			G	G	G	S	S	S							S	S	T	T											S	S						T	T	T	S	S	S																	T	T	S						S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	V	V	Y	A	V	E	N	H	L	K	D	I	L	T	S	V	V	S	R	R	K	A	Y	R	L	R	D	G	H	F	K	Y	A	F	G	S	N	V	T	P	Q	P	Y	L	K	N	S	V	V	A	Y	N	N	L	I	E	S	P	P	P	P	P	D	D	A	E	Q	Q	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				T	T	S					B	T	T	T	B					S	S	S					T	T	S												S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	L	L	L	A	C	S	G	D	T	L	P	A	S	L	P	P	V	N	M	Y	D	L	F	E	A	L	Q	V	H	R	E	V	I	P	T	H	T	V	Y	A	L	N	I	E	R	I	I	T	K	L	W	H	P	N	H	E	E	L	Q	Q	D	K	V	H	R	Q	R	L	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S	S																					S	S																T	T
	.	.	.	.
Sequence	A	K	E	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)