PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c7ktrD_

Fold library id	PDB Header	Molecule	Title
c7ktrD_	2.93	PDB header: transcription	Chain: D: PDB Molecule: staga complex 65 subunit gamma,dhaa,staga complex 65

Links to external resources
Added to library: Sat Nov 13 08:38:58 2021

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence X X X X X X X X X X X X X X X M L D I P S E P C S L T I H T I Q L I Q H N R R L R N L I A T A Q A Q N X X X X X X X X X X X X X X X X X X X

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S
S S
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence X X X D C K N P N A P F Q I R H S D P E S D F Y R G K G E P V T E L S W H S C R Q L L Y Q A V A T I L A H A G F D C A N E S V L E T L T D V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
S S
T T S T
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A H E Y C L K F T K L L R F A V D R E A R L G Q T P F P D V M E Q V F H E V G I G S V L S L Q K F W Q H R I K D Y H S Y M L Q I S K Q L S E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S S S T S
T T T

. . . . . . . . .

Sequence E Y E R I V N P E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group,
Imperial College,
London
Michael Sternberg
Disclaimer

Terms and Conditions

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	M	L	D	I	P	S	E	P	C	S	L	T	I	H	T	I	Q	L	I	Q	H	N	R	R	L	R	N	L	I	A	T	A	Q	A	Q	N	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S						S	S																																											S	S												S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	X	X	X	D	C	K	N	P	N	A	P	F	Q	I	R	H	S	D	P	E	S	D	F	Y	R	G	K	G	E	P	V	T	E	L	S	W	H	S	C	R	Q	L	L	Y	Q	A	V	A	T	I	L	A	H	A	G	F	D	C	A	N	E	S	V	L	E	T	L	T	D	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T		T	T		S	S							T	T	S					T																													T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	H	E	Y	C	L	K	F	T	K	L	L	R	F	A	V	D	R	E	A	R	L	G	Q	T	P	F	P	D	V	M	E	Q	V	F	H	E	V	G	I	G	S	V	L	S	L	Q	K	F	W	Q	H	R	I	K	D	Y	H	S	Y	M	L	Q	I	S	K	Q	L	S	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																							S			S	S	S	S									T	S				T	T										T
	.	.	.	.	.	.	.	.	.
Sequence	E	Y	E	R	I	V	N	P	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S