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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7ktrA_

Fold library idPDB HeaderMoleculeTitle
c7ktrA_2.93PDB header: transcriptionChain: A: PDB Molecule: transformation/transcription domain-associated protein,


Added to library: Sat Nov 13 09:07:01 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence XXXXXXXXXXXXXXXXXETLRPLAYSTLADLVHHVRQHLPLSDLSLAVQLFAKNIDDESLPSSIQTMSCK
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Known secondary structure (DSSP)

SSSTGGG

GGGTT


S
SS

T
SSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence LLLNLVDCIRSKSEQESGNGRDVLMRMLEVFVLKFHTIARYQLSAIFKKCKPQSDKEDKQTFQVTDCRSL
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Known secondary structure (DSSP) TGGG


T

TT

 .........150.........160.........170.........180.........190.........200.........210
Sequence VKTLVCGVKTITWGITSCKAPGAQFIPNKQLQPKETQIYIKLVKYAMQALDIYQVQIAGNGQTYIRVANC
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Known secondary structure (DSSP) TSS

SSS


TT



GGGGG
SSS


S

 .........220.........230.........240.........250.........260.........270.........280
Sequence QTVRMKEEKEVLEHFAGVFTMMNPLTFKEIFQTTVPYMVERISKNYALQIVANSFLANPTTSALFATILV
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Known secondary structure (DSSP)


GGGTSS
TT
GGGSTTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence EYLLDRLPEMGSNVELSNLYLKLFKLVFGSVSLFAAENEQMLKPHLHKIVNSSMELAQTAKEPYNYFLLL
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Known secondary structure (DSSP) T
TTTTT

GGGTT
S

 .........360.........370.........380.........390.........400.........410.........420
Sequence RALFRSIGGGSHDLLYQEFLPLLPNLLQGLNMLQSGLHKQHMKDLFVELCLTVPVRLSSLLPYLPMLMDP
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Known secondary structure (DSSP) SS


GGGS




S

TTTTGGGGGGG
 .........430.........440.........450.........460.........470.........480.........490
Sequence LVSALNGSQTLVSQGLRTLELCVDNLQPDFLYDHIQPVRAELMQALWRTLRNPADSISHVAYRVLGKFGG
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Known secondary structure (DSSP) TS
S
GGGTT
S
GG
 .........500.........510.........520.........530.........540.........550.........560
Sequence SNRKMLKESQKLHYVVTEVQGPSITVEFSDCKASLQLPMEKAIETALDCLKSANTEPYYRRQAWEVIKCF
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Known secondary structure (DSSP) GGG


SS









S


TTTT

SS

 .........570.........580.........590.........600.........610.........620.........630
Sequence LVAMMSLEDNKHALYQLLAHPNFTEKTIPNVIISHRYKAQDTPARKTFEQALTGAFMSAVIKDLRPSALP
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Known secondary structure (DSSP) TB




T
TS







GGG




TSTTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence FVASLIRHYTMVAVAQQCGPFLLPCYQVGSQPSTAMFHSEENGSKGMDPLVLIDAIAICMAYEEKELCKI
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Known secondary structure (DSSP) SSSS

GGGSTT



GGGS

SSS

SS

TTSS
TT
 .........710.........720.........730.........740.........750.........760.........770
Sequence GEVALAVIFDVASIILGSKERACQLPLFSYIVERLCACCYEQAWYAKLGGVVSIKFLMERLPLTWVLQNQ
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Known secondary structure (DSSP) SSTTSGGGGSSSS
 .........780.........790.........800.........810.........820.........830.........840
Sequence QTFLKALLFVMMDLTGEVSNGAVAMAKTTLEQLLMRCATPLKDEERAEEIVAAQEKSFHHVTHDLVREVT
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Known secondary structure (DSSP) TTTS

SSS


TTT

TT
 .........850.........860.........870.........880.........890.........900.........910
Sequence SPNSTVRKQAMHSLQVLAQVTGKSVTVIMEPHKEVLQDMVPPKKHLLRHQPANAQIGLMEGNTFCTTLQP
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Known secondary structure (DSSP)
S
T

GGGGGGSTTTSS
TT

GGGS
TSSSS
 .........920.........930.........940.........950.........960.........970.........980
Sequence RLFTMDLNVVEHKVFYTELLNLCEAEDSALTKLPCYKSLPSLVPLRIAALNALAACNYLPQSREKIIAAL
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Known secondary structure (DSSP)
SS


SSSS
TSSTTSS
S





GGG
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence FKALNSTNSELQEAGEACMRKFLEGATIEVDQIHTHMRPLLMMLGDYRSLTLNVVNRLTSVTRLFPNSFN
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Known secondary structure (DSSP) T
SSTT



TTTSSSTT


STT

 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence DKFCDQMMQHLRKWMEVVVITHKGGQRSDGNEMKICSAIINLFHLIPAAPQTLVKPLLEVVMKTERAMLI
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Known secondary structure (DSSP)

S



SS

SS
T
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence EAGSPFREPLIKFLTRHPSQTVELFMMEATLNDPQWSRMFMSFLKHKDARPLRDVLAANPNRFITLLLPG
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Known secondary structure (DSSP) STT
SSTTSSSS
TSSS
T
TTTTS

 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence MRLDLQFQAIKIISIIVKNDDSWLASQHSLVSQLRRVWVSENFQERHRKENMAATNWKEPKLLAYCLLNY
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Known secondary structure (DSSP)

TTSS
GGG
SSS
SS
S
TT
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence CKRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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Known secondary structure (DSSP)

TTSSSS


S

STT






SS


S

 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure
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Known secondary structure (DSSP)





T


TT



 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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Known secondary structure (DSSP) T






TT


GGGG




S

S


S


 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure
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Known secondary structure (DSSP)

TT
TGGG



TT





T
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTSELVMLSLELVKTRLAVMSMEMRKNFIQAILTSL
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Known secondary structure (DSSP) TSS
SGGGTTTTTTTT



TTTS




 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence IEKSPDAKILRAVVKIVEEWVKNNSPMAANQTPTLREKSILLVKMMTYIEKRFPEDLELNAQFLDLVNYV
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Known secondary structure (DSSP)


S

SS
GGG




SS
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence YRDETLSGSELTAKLEPAFLSGLRCAQPLIRAKFFEVFDNSMKRRVYERLLYVTCSQNWEAMGNHFWIKQ
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Known secondary structure (DSSP) S
TTTTTTGGGGG
SSTS
S
TT

GGGGTT

T
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence CIELLLAVCEKSTPIGTSCQGAMLPSITNVINLADSHDRAAFAMVGNQLHMLTNRHDKFLDTLREVKTGA
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Known secondary structure (DSSP) TSS

SSB


S
TTTSB

TTS


TT
B
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence LLSAFVQLCHISTTLAEKTWVQLFPRLWKILSDRQQHALAGEISPFLCSGSHQVQRDCQPSALNCFVEAM
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Known secondary structure (DSSP) TT
S
T
GGGGGGGG
SS
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence SQCVPPIPIRPCVLKYLGKTHNLWFRSTLMLEHQAFEKGLSLQIKPKQTTEFYEQESITPPQQEILDSLA
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Known secondary structure (DSSP) TT
SS




TT
TSS



SS
SS
GGG
SS


SS
TT
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence ELYSLLQEEDMWAGLWQKRCKYSETATAIAYEQHGFFEQAQESYEKAMDKAKKEHERSNASPAIFPEYQL
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Known secondary structure (DSSP) T


STTT
S


GGG
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence WEDHWIRCSKELNQWEALTEYGQSKGHINPYLVLECAWRVSNWTAMKEALVQVEVSCPKEMAWKVNMYRG
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Known secondary structure (DSSP) TT
B
SSSB
GGGT
TTT

GGG
 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence YLAICHPEEQQLSFIERLVEMASSLAIREWRRLPHVVSHVHTPLLQAAQQIIELQEAAQINAGLQPTNLG
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Known secondary structure (DSSP)
TT


TTSTTS
SS

GGGTSGGGTT
 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence RNNSLHDMKTVVKTWRNRLPIVSDDLSHWSSIFMWRQHHYQAIVTAYENSSQHDPSSNNAMLGVHASASA
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Known secondary structure (DSSP)




TTS

SS
TT
 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence IIQYGKIARKQGLVNVALDILSRIHTIPTVPIVDCFQKIRQQVKCYLQLAGVMGKNECMQGLEVIESTNL
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Known secondary structure (DSSP) T
GGGGSS


TTT

S


 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence KYFTKEMTAEFYALKGMFLAQINKSEEANKAFSAAVQMHDVLVKAWAMWGDYLENIFVKERQLHLGVSAI
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Known secondary structure (DSSP) SS

TT

TT


 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence TCYLHACRHQNESKSRKYLAKVLWLLSFDDDKNTLADAVDKYCIGVPPIQWLAWIPQLLTCLVGSEGKLL
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Known secondary structure (DSSP) TTSS
TTTTGGG

TT

TTS
GGGGGGGTSTT
 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence LNLISQVGRVYPQAVYFPIRTLYLTLKIEQRERYKPIRATAPMWRCSRIMHMQRELHPTLLSSLEGIVDQ
Predicted secondary structure


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Known secondary structure (DSSP)
T





S
 .........2530.........2540.........2550.........2560.........2570.........2580.........2590
Sequence MVWFRENWHEEVLRQLQQGLAKCYSVAFEKSGAVSDAKITPHTLNFVKKLVSTFGVGLENFSSAASESLA
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Known secondary structure (DSSP) GGGG


TTTTSS
B

T
S







S
 .........2600.........2610.........2620.........2630.........2640.........2650.........2660
Sequence RRAQATAQDPVFQKLKGQFTTDFDFSVPGSMKLHNLISKLKKWIKILEAKTKQLPKFFLIEEKCRFLSNF
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Known secondary structure (DSSP) TTST
S
STTTTBTTS
SGGGT

 .........2670.........2680.........2690.........2700.........2710.........2720.........2730
Sequence SAQTAEVEIPGEFLMPKPTHYYIKIARFMPRVEIVQKHNTAARRLYIRGHNGKIYPYLVMNDACLTESRR
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Known secondary structure (DSSP)
TTT


B
TTTTSS

SSS


B
S
SSSTTS


S
 .........2740.........2750.........2760.........2770.........2780.........2790.........2800
Sequence EERVLQLLRLLNPCLEKRKETTKRHLFFTVPRVVAVSPQMRLVEDNPSSLSLVEIYKQRCAKKGIEHDNP
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Known secondary structure (DSSP) GGGGGSSTTT






TT

SST

TT
 .........2810.........2820.........2830.........2840.........2850.........2860.........2870
Sequence ISRYYDRLATVQARGTQASHQVLRDILKEVQSNMVPRSMLKEWALHTFPNATDYWTFRKMFTIQLALIGF
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Known secondary structure (DSSP) S



T

TT

S
 .........2880.........2890.........2900.........2910.........2920.........2930.........2940
Sequence AEFVLHLNRLNPEMLQIAQDTGKLNVAYFRFDINDATGDLDANRPVPFRLTPNISEFLTTIGVSGPLTAS
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Known secondary structure (DSSP) TTB



GGGTTT

S


B
B
TTTSSB



SSSS



T
 .........2950.........2960.........2970.........2980.........2990.........3000.........3010
Sequence MIAVARCFAQPNFKVDGILKTVLRDEIIAWHKKTQEDTSGQPENMDSQQLVSLVQKAVTAIMTRLHNLAQ
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Known secondary structure (DSSP) T
TTT


GGGS


 .........3020.........3030.........3040..
Sequence FEGGESKVNTLVAAANSLDNLCRMDPAWHPWL
Predicted secondary structure














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Known secondary structure (DSSP)
GGG

T
TTS
GGG
S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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