PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c7dwmA_

Fold library id	PDB Header	Molecule	Title
c7dwmA_	2.65	PDB header: transcription	Chain: A: PDB Molecule: vqma;

Links to external resources
Added to library: Sat May 8 09:34:27 2021

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S I S E G D D A Y I R S L I H F F G N Q P D P W G I K D T K S V F I Y A N Q P F R E L V G M K N R N V E G L T D A D M D C E T A A F A D S F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S
T T
T T
S S
S
S S
S S S G G G G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Q A Q D R L V E Q G R E K K I V L D V H P Y A N G W R V F T F T K T P L I M P S G R V A G T I F H G Q D L T D T A G R I E R A V V E L L L N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
S S
T T
T T
S
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L T E R E E L V L F F L L R G R T A K D I A G M L G R S P R T I E H A I E R I R N K F G A G N K R E L I D M A M S K G Y Y S M V P K A L F H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
T S
T
S S T T G G G
G G G T T

. . . . . . . .

Sequence T Q V S M L L K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	I	S	E	G	D	D	A	Y	I	R	S	L	I	H	F	F	G	N	Q	P	D	P	W	G	I	K	D	T	K	S	V	F	I	Y	A	N	Q	P	F	R	E	L	V	G	M	K	N	R	N	V	E	G	L	T	D	A	D	M	D	C	E	T	A	A	F	A	D	S	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		T	T		S	S							T	T														T	T		S	S					S			S	S		S	S	S	G	G	G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Q	A	Q	D	R	L	V	E	Q	G	R	E	K	K	I	V	L	D	V	H	P	Y	A	N	G	W	R	V	F	T	F	T	K	T	P	L	I	M	P	S	G	R	V	A	G	T	I	F	H	G	Q	D	L	T	D	T	A	G	R	I	E	R	A	V	V	E	L	L	L	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T	T		S	S											T	T															T	T		S																								T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	T	E	R	E	E	L	V	L	F	F	L	L	R	G	R	T	A	K	D	I	A	G	M	L	G	R	S	P	R	T	I	E	H	A	I	E	R	I	R	N	K	F	G	A	G	N	K	R	E	L	I	D	M	A	M	S	K	G	Y	Y	S	M	V	P	K	A	L	F	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T	T											T	S																	T		S	S											T	T	G	G	G				G	G	G	T	T
	.	.	.	.	.	.	.	.
Sequence	T	Q	V	S	M	L	L	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)