PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c7bvtA_

Fold library id	PDB Header	Molecule	Title
c7bvtA_	1.47	PDB header: sugar binding protein	Chain: A: PDB Molecule: hypothetical sugar abc-transporter sugar binding protein;

Links to external resources
Added to library: Sat Dec 5 09:31:31 2020

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G P V E V T V W H Y W D G T N A D A F D A M V D T Y N A S Q S D V R I S A S N V P N S D F L T K L R A S A T S D T L P D I A I G D L V W V P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S S
G G G T
S G G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Q I A D I G T L A D L N G R I P D D T L T D V N D A L T S F G T I D G K Q V S V P V S A N N L G Y M Y N K T L F A E A G L D P E N P P T T W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
B
B T T B
B
T T T
S
B T T
T T
B

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence D E L K A A G Q T I L D E T G K P G Y D L Y T Q A G D S G E G L T W N F Q V N L W Q A G G D F L T A D N S A A A F N T P E G A E A L Q Y W V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
S S B
T T T S T T
S B
T T S S S B
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence D L I D S G V S P Y A K W G E F E K G Q G G S A Q E G S W M V G I W A A D P P F E F G T A Q V P Y P S D G E P A T N L G G E Q A M V F E N S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S
T T
T T T T T T T
S S T S
S S
B
T T S
B

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence D A E D D A A A D F L S W F L E P D Q V T E W S K E T G M L P V L D S V A T G S A Y L E W V E S T E P R L L P Y V E Q M A D A H A R P N T A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S T
B
S B T
G G G G G G G
T

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 .

Sequence L Y P T V S L A F A Q E I E K A L A G E A S V D D A L D A A E Q A V N A V L K N G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group,
Imperial College,
London
Michael Sternberg
Disclaimer

Terms and Conditions

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	P	V	E	V	T	V	W	H	Y	W	D	G	T	N	A	D	A	F	D	A	M	V	D	T	Y	N	A	S	Q	S	D	V	R	I	S	A	S	N	V	P	N	S	D	F	L	T	K	L	R	A	S	A	T	S	D	T	L	P	D	I	A	I	G	D	L	V	W	V	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																													T		S	S										G	G	G												T				S						G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Q	I	A	D	I	G	T	L	A	D	L	N	G	R	I	P	D	D	T	L	T	D	V	N	D	A	L	T	S	F	G	T	I	D	G	K	Q	V	S	V	P	V	S	A	N	N	L	G	Y	M	Y	N	K	T	L	F	A	E	A	G	L	D	P	E	N	P	P	T	T	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S		B				B	T	T	B								B								T			T	T							S		B															T	T			T	T					B
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	D	E	L	K	A	A	G	Q	T	I	L	D	E	T	G	K	P	G	Y	D	L	Y	T	Q	A	G	D	S	G	E	G	L	T	W	N	F	Q	V	N	L	W	Q	A	G	G	D	F	L	T	A	D	N	S	A	A	A	F	N	T	P	E	G	A	E	A	L	Q	Y	W	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															S	S		S	S	B						T	T	T	S														T	T			S	B		T	T	S	S	S	B				S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	D	L	I	D	S	G	V	S	P	Y	A	K	W	G	E	F	E	K	G	Q	G	G	S	A	Q	E	G	S	W	M	V	G	I	W	A	A	D	P	P	F	E	F	G	T	A	Q	V	P	Y	P	S	D	G	E	P	A	T	N	L	G	G	E	Q	A	M	V	F	E	N	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	S	S		T	T		T	T	T	T	T	T	T		S	S						T									S		S	S									B		T	T	S														B
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	D	A	E	D	D	A	A	A	D	F	L	S	W	F	L	E	P	D	Q	V	T	E	W	S	K	E	T	G	M	L	P	V	L	D	S	V	A	T	G	S	A	Y	L	E	W	V	E	S	T	E	P	R	L	L	P	Y	V	E	Q	M	A	D	A	H	A	R	P	N	T	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T	S												T		B		S	B					T													G	G	G						G	G	G	G								T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Sequence	L	Y	P	T	V	S	L	A	F	A	Q	E	I	E	K	A	L	A	G	E	A	S	V	D	D	A	L	D	A	A	E	Q	A	V	N	A	V	L	K	N	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T																	T	T	S	S