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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c7aodB_

Fold library idPDB HeaderMoleculeTitle
c7aodB_4.50PDB header: transcriptionChain: B: PDB Molecule: probable dna-directed rna polymerase i subunit rpa2;


Added to library: Sat Feb 27 08:32:33 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MSFQTLERERTFKNPPKDGTSFPDLQKAVKPHVDSFNALTNAGLLNYAVKEIGEKCAFDSITQEEGGALK
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Known secondary structure (DSSP)



SS

SSS
S
STTTT







TT
SS

 .........80.........90.........100.........110.........120.........130.........140
Sequence FGNKISFRVDEVQIAKPMLSSRERSSINRKVYPAEARERLTTYKSRLVLKFSWSVNGGPRQSEMREVGMI
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Known secondary structure (DSSP)






BSSSS

SS


B

TT




SSSS


 .........150.........160.........170.........180.........190.........200.........210
Sequence PIMVRSNRCHLEGLSPAELIAHKEESEEMGGYFIVNGIEKLIRMLILPKRNHPTAIIRPSFANRGTSYSQ
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Known secondary structure (DSSP)
BTTSTTSTTTT

TTS
TT




TT

BS


GGGTTTSTTS
S
 .........220.........230.........240.........250.........260.........270.........280
Sequence YGLSIRCVRPDQSSLTNTLHYLNNGVTMFRFHWRKNEYLIPSMMILKALLETSDKEIFEGIVGKDLGNTF
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Known secondary structure (DSSP)

TTS


TTS
TTS


S
SSS

 .........290.........300.........310.........320.........330.........340.........350
Sequence LTDRVELMLRAYKSYGLYSQTETLQYLGSKFRVVLGVAEDLTDVEVGRFLLQKVVLVHLREAKDKFRLLL
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Known secondary structure (DSSP) TT

SSTTTS


SSS
STTTTT


 .........360.........370.........380.........390.........400.........410.........420
Sequence FMIRKLYALVAGECCADNPDSPQHQEILLGGFLYGQILKEKIEDWLNSIRAQINLDVRRSAPGVDFSDRK
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Known secondary structure (DSSP) TTSS



SSSGGG
SS
SS

TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence YLTRVFSKINNDIGTKLQYFLSTGNLVSNTGLDLQQATGYTVVAEKLNFYRFLSHFRMVHRGAFFAELKT
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Known secondary structure (DSSP) S








SS

S
S

S




SSB

TS
S
 .........500.........510.........520.........530.........540.........550.........560
Sequence TTVRKLLPEAWGFMCPVHTPDGSPCGLLNHLARKCEIVTHPSDVSQIPSLLLSLGVDPPSVVGHESGWGC
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Known secondary structure (DSSP) SSTTS

S

TTTB
SS



STTTTTS
BB
SS






TTTT



SS



TT
 .........570.........580.........590.........600.........610.........620.........630
Sequence VQLDGKIVGWCTYKLAKHVADVLRLMKIEYAVKLRNGTATEPAKVPLDLEIGYVPPSHNGQYPGLYLFSN
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Known secondary structure (DSSP) SS
TTS


S
SS
TT





TTSS




 .........640.........650.........660.........670.........680.........690.........700
Sequence PARMVRPVKHISTGELDMLGPFEQVYMDIACFPKEIVPKVSTHVEYSPTNVLSIVANMTPFSDFNQSPRN
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Known secondary structure (DSSP) SSTTTT
TTTGGG

SSTTT

TTT


S
GGGGS
SSTTTTSS
 .........710.........720.........730.........740.........750.........760.........770
Sequence MYQCQMGKQTMGTPGTALRYRTDNKLYRLQTGQTPVVRPKLHNTYGLDHYPNGTNAVVAVISYTGYDMED
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Known secondary structure (DSSP) TT

S


S

TT


SSS



S
TTTGGG





SSS

TT
 .........780.........790.........800.........810.........820.........830.........840
Sequence AMILNKSAHERGFGYGTVYKGESFDLSQKRRRGEPVVHHFGFAPGSTPRREWLQKLDADGLPFIGIKLED
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Known secondary structure (DSSP)
B
TT
S
SSTT

SSS
S

S

SS


TTTB
SSS
B
TT

B
S
 .........850.........860.........870.........880.........890.........900.........910
Sequence GDPIVAYYDESTGQNFIETYHGTEPGFVDEVRLLGNDVGDSECQQIHVKLRITRSPIIGDKFSSRHGQKG
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Known secondary structure (DSSP) S


TTT

B




SS
B




SSSS






TT
TTS
 .........920.........930.........940.........950.........960.........970.........980
Sequence ICSQKWPTVDMPFTESGMQPDIIINPHAFPSRMTIGMFIESLAGKAGACHGLAQDSTPFIYSEQQTAADY
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Known secondary structure (DSSP) B




TTSS
B
SS



S
GGGSTTTT
T



TT
S
SSS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence FGEQLVKAGYNYHGNEPMYSGITGQEMKADIYIGVVYYQRLRHMFQVRTTGPIHNLTRQPVKIRFGEMER
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Known secondary structure (DSSP) TS
TTS

B
TTT
SB
SS








SS

B
SSS

B





SS
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence DAVIGHGTSFLMQDRLMNCSDYAQSWVCRDCGSIISIMSTISMNGVGSASEVRCRSCAKTSDIWQDGSGK
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Known secondary structure (DSSP) T
TTTT


TTT

SSS




SSS
S



STTB


S
B

SS

 .........1130.........1140.........1150......
Sequence KFVGGTNTTLIALPSVFNYLTAELTAMNIKMMLEVK
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Known secondary structure (DSSP)
B
B




TTT








Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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