PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c7a6hM_

Fold library id	PDB Header	Molecule	Title
c7a6hM_	3.30	PDB header: transcription	Chain: M: PDB Molecule: dna-directed rna polymerase iii subunit rpc5;

Links to external resources
Added to library: Sat Feb 6 10:09:29 2021

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D D P V V Q E I D V Y L A K S L A E K L Y L F Q Y P V R P A S M T Y D D I P H L S A K I K P K Q Q K V E L E M A I D T L N P N Y C R S K G E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T T T T
T T
S S S
S S S S
T T T T
S S S T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Q I A L N V D G A C A D E T S T Y S S K L M D K Q T F C S S Q T T S N T S R Y A A A L Y R Q G E L H L T P L H G I L Q L R P S F S Y L D K A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S
S S
S
S S S S
S
T T
S S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence D A K H R E R E A E Q A R Q R R V Q S Y E F L Q K K H A E E P W V H L H Y Y G L R D S R S E H E R Q Y L L C P G S S G V E N T E L V K S P S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S S
S S S G G G S
S
S S

. . . . . . . . . 220

Sequence E Y L M M L M P P S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	D	P	V	V	Q	E	I	D	V	Y	L	A	K	S	L	A	E	K	L	Y	L	F	Q	Y	P	V	R	P	A	S	M	T	Y	D	D	I	P	H	L	S	A	K	I	K	P	K	Q	Q	K	V	E	L	E	M	A	I	D	T	L	N	P	N	Y	C	R	S	K	G	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S										T	T	T	T	T							T	T			S	S	S		S	S	S	S									T	T	T	T										S	S	S	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Q	I	A	L	N	V	D	G	A	C	A	D	E	T	S	T	Y	S	S	K	L	M	D	K	Q	T	F	C	S	S	Q	T	T	S	N	T	S	R	Y	A	A	A	L	Y	R	Q	G	E	L	H	L	T	P	L	H	G	I	L	Q	L	R	P	S	F	S	Y	L	D	K	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S		S	S			S	S		S		S	S	S	S													S			T	T								S	S								S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	D	A	K	H	R	E	R	E	A	E	Q	A	R	Q	R	R	V	Q	S	Y	E	F	L	Q	K	K	H	A	E	E	P	W	V	H	L	H	Y	Y	G	L	R	D	S	R	S	E	H	E	R	Q	Y	L	L	C	P	G	S	S	G	V	E	N	T	E	L	V	K	S	P	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T	T	S										S	S										S	S	S								G	G	G	S					S					S	S
	.	.	.	.	.	.	.	.	.	220
Sequence	E	Y	L	M	M	L	M	P	P	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S