PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c7a1dA_

Fold library id	PDB Header	Molecule	Title
c7a1dA_	4.19	PDB header: oxidoreductase	Chain: A: PDB Molecule: nad-specific glutamate dehydrogenase;

Links to external resources
Added to library: Sat Jun 12 08:53:34 2021

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D A I A D I S L I E A L Q D D S V K L V L A D T A E D R V W K L T W Y L G G H S A S L S E L L P M L Q S M G V V V L E E R P F T L R R T D G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S S
S S S
S S
S T T T T T T T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L P V W I Y Q F K I S P H P S I P H A P D A E A Q R D T A Q R F A D A V T A I W H G R V E I D R F N E L V M R A G L T W Q Q V V V L R A Y A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
S S S S
T T S T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K Y L R Q A G F P Y S Q S H I E S V L N E N P H T T R S L I D L F E A L F D P S Q E T D G R R D A Q G A A A A V A A D I D A L V S L D T D R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S
T T T T
T T S
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence V L R A F A N L I E A T L R T N Y F V N V L A F K L N P L V I K E L P L P R P K F E I F V Y S P R V E G V H L R F G F V A R G G L R W S D R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T S
S
S
S T T S S S S
B

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence R E D F R T E I L G L V K A Q A V K N A V I V P V G A K G G F V V K R P P T L T G D A A A D R E A T R A E G V E C Y R L F I S G L L D V T D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T S S S S S
S S
S
S S

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence N V D K A T G A V V T P P E V V R R D G E D A Y L V V A A D K G T A T F S D I A N E V A K S Y G F W L G D A F A G I T A K G A W E S V K R H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
S
S S
S S
S
S S
S T T
T T
S
S

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence F R E M G V D T Q T Q D F T V V G I G D M S G D V F G N G M L L S K H I R L V A A F D H R D I F L D P N P D A G R S W D E R K R L F D L P R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S
S S S T T T
S S B
S
S
S S

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence S S W A D Y D K S L I S E G G G V Y S R Q Q K S I P I S P Q V R T A L G L D A D V E E L T P P A L I K A I L K A P V D L L W N G G I G T Y I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T
B S S S
S
S S
S S
S
S
S S

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence K A E T E A D A D N D Q I R V C G N Q V R A K V I G E G G N L G V T A L G R I E F D L A G G R I N T D A L D N S A G V D C S D H E V N I K I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
S
S S S
B
S S S
S S S
S S

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence L I D S A V T A G K V T P E E R T E L L L S M T D E V G E L V L A D N R D Q N D L M G T S R A N A A S L L S V H A R M I K D L V D N R G L N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S
T T T T T S T T T
T T S
S

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence R E L E A L P S E K E I R R R A D A G I G L T S P E L A T L M A H V K L A L K D D V L A S D L P D Q E V F A S R L P Y Y F P T R L R E E L H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S T T T T T T T T
T T S S
T T S S T T S S

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence G E I R S H Q L R R E I I T T M L V N D L V D T A G I S Y A Y R I T E D V G V G P V D A V R S Y V A I N A I F G I G D V W R R I R A A G D A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S T T T
S T T B
S
T T T T T

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence G V P T S V T D R M T L D L R R L V D R A G R W L L N Y R P Q P L A V G A E I N R F G A K V A A L T P R M S E W L R G D D K A I V S K E A G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S
S S T T T T G G G G S
S

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence D F A S H G V P E D L A Y H I A T G L Y Q Y S L L D V I D I A D I V D R E P D E V A D T Y F A L M D H L G A D A L L T A V S R L S R D D R W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
T
T
T T
S

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . . . . . 1030 . . . . . . . . . 1040 . . . . . . . . . 1050

Sequence H S L A R L A I R D D I Y G S L R A L C F D V L A V G E P D E N G E E K I A E W E T T N S S R V T R A R R T L T E I Y K D G E Q D L A T L S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T S

. . . . . . . . . 1060 . . .

Sequence V A A R Q I R S M T R T S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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Phyre2 is part of Genome3D

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	A	I	A	D	I	S	L	I	E	A	L	Q	D	D	S	V	K	L	V	L	A	D	T	A	E	D	R	V	W	K	L	T	W	Y	L	G	G	H	S	A	S	L	S	E	L	L	P	M	L	Q	S	M	G	V	V	V	L	E	E	R	P	F	T	L	R	R	T	D	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T			S	S	S										S	S	S										S	S				S	T	T	T						T	T	T														T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	P	V	W	I	Y	Q	F	K	I	S	P	H	P	S	I	P	H	A	P	D	A	E	A	Q	R	D	T	A	Q	R	F	A	D	A	V	T	A	I	W	H	G	R	V	E	I	D	R	F	N	E	L	V	M	R	A	G	L	T	W	Q	Q	V	V	V	L	R	A	Y	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T	S					S																				S	S	S						T	T	S	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	Y	L	R	Q	A	G	F	P	Y	S	Q	S	H	I	E	S	V	L	N	E	N	P	H	T	T	R	S	L	I	D	L	F	E	A	L	F	D	P	S	Q	E	T	D	G	R	R	D	A	Q	G	A	A	A	A	V	A	A	D	I	D	A	L	V	S	L	D	T	D	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T			S	S																								T	T	T	T		T	T	S																									T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	V	L	R	A	F	A	N	L	I	E	A	T	L	R	T	N	Y	F	V	N	V	L	A	F	K	L	N	P	L	V	I	K	E	L	P	L	P	R	P	K	F	E	I	F	V	Y	S	P	R	V	E	G	V	H	L	R	F	G	F	V	A	R	G	G	L	R	W	S	D	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T																	T	T	S			S			S				S								T	T								S	S	S	S							B
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	R	E	D	F	R	T	E	I	L	G	L	V	K	A	Q	A	V	K	N	A	V	I	V	P	V	G	A	K	G	G	F	V	V	K	R	P	P	T	L	T	G	D	A	A	A	D	R	E	A	T	R	A	E	G	V	E	C	Y	R	L	F	I	S	G	L	L	D	V	T	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T															T	T	S	S	S	S	S										S	S						S																											S	S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	N	V	D	K	A	T	G	A	V	V	T	P	P	E	V	V	R	R	D	G	E	D	A	Y	L	V	V	A	A	D	K	G	T	A	T	F	S	D	I	A	N	E	V	A	K	S	Y	G	F	W	L	G	D	A	F	A	G	I	T	A	K	G	A	W	E	S	V	K	R	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S	S		S					S	S			S	S			S										S	S		S	T	T														T	T		S						S
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	F	R	E	M	G	V	D	T	Q	T	Q	D	F	T	V	V	G	I	G	D	M	S	G	D	V	F	G	N	G	M	L	L	S	K	H	I	R	L	V	A	A	F	D	H	R	D	I	F	L	D	P	N	P	D	A	G	R	S	W	D	E	R	K	R	L	F	D	L	P	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T				S	S										S	S	S											T	T	T										S	S	B						S			S														S	S
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	S	S	W	A	D	Y	D	K	S	L	I	S	E	G	G	G	V	Y	S	R	Q	Q	K	S	I	P	I	S	P	Q	V	R	T	A	L	G	L	D	A	D	V	E	E	L	T	P	P	A	L	I	K	A	I	L	K	A	P	V	D	L	L	W	N	G	G	I	G	T	Y	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S											S	T	T					B	S	S	S											S		S	S		S	S																S			S						S	S
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	K	A	E	T	E	A	D	A	D	N	D	Q	I	R	V	C	G	N	Q	V	R	A	K	V	I	G	E	G	G	N	L	G	V	T	A	L	G	R	I	E	F	D	L	A	G	G	R	I	N	T	D	A	L	D	N	S	A	G	V	D	C	S	D	H	E	V	N	I	K	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S	S							S					S	S	S							B			S	S	S				S								S	S							S	S
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	L	I	D	S	A	V	T	A	G	K	V	T	P	E	E	R	T	E	L	L	L	S	M	T	D	E	V	G	E	L	V	L	A	D	N	R	D	Q	N	D	L	M	G	T	S	R	A	N	A	A	S	L	L	S	V	H	A	R	M	I	K	D	L	V	D	N	R	G	L	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T		S												T	T	T	T	T																					S	T	T	T														T	T	S		S
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	R	E	L	E	A	L	P	S	E	K	E	I	R	R	R	A	D	A	G	I	G	L	T	S	P	E	L	A	T	L	M	A	H	V	K	L	A	L	K	D	D	V	L	A	S	D	L	P	D	Q	E	V	F	A	S	R	L	P	Y	Y	F	P	T	R	L	R	E	E	L	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	S	T	T	T	T	T						T	T	T																								T	T	S	S		T	T	S							S	T	T	S	S
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	G	E	I	R	S	H	Q	L	R	R	E	I	I	T	T	M	L	V	N	D	L	V	D	T	A	G	I	S	Y	A	Y	R	I	T	E	D	V	G	V	G	P	V	D	A	V	R	S	Y	V	A	I	N	A	I	F	G	I	G	D	V	W	R	R	I	R	A	A	G	D	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	S	S	T																T	T		S								T	T	B		S																											T	T	T	T	T
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	G	V	P	T	S	V	T	D	R	M	T	L	D	L	R	R	L	V	D	R	A	G	R	W	L	L	N	Y	R	P	Q	P	L	A	V	G	A	E	I	N	R	F	G	A	K	V	A	A	L	T	P	R	M	S	E	W	L	R	G	D	D	K	A	I	V	S	K	E	A	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T																												S	S			S	S													T	T	T	T	G	G	G	G	S		S
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	D	F	A	S	H	G	V	P	E	D	L	A	Y	H	I	A	T	G	L	Y	Q	Y	S	L	L	D	V	I	D	I	A	D	I	V	D	R	E	P	D	E	V	A	D	T	Y	F	A	L	M	D	H	L	G	A	D	A	L	L	T	A	V	S	R	L	S	R	D	D	R	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	T																													T																		T									T	T					S
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050
Sequence	H	S	L	A	R	L	A	I	R	D	D	I	Y	G	S	L	R	A	L	C	F	D	V	L	A	V	G	E	P	D	E	N	G	E	E	K	I	A	E	W	E	T	T	N	S	S	R	V	T	R	A	R	R	T	L	T	E	I	Y	K	D	G	E	Q	D	L	A	T	L	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																												S	S														T	T																	S
	.	.	.	.	.	.	.	.	.	1060	.	.	.
Sequence	V	A	A	R	Q	I	R	S	M	T	R	T	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T