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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c6zywC_

Fold library idPDB HeaderMoleculeTitle
c6zywC_8.78PDB header: motor proteinChain: C: PDB Molecule: dynein heavy chain, outer arm protein;


Added to library: Sat Jan 23 17:57:50 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SKRIAWMKTTICDSLQLKDMIVEESFQYEKNKNLLEQFLSGEGLNKIFAYYQVQEQAQNDDIKDTGAQDP
Predicted secondary structure







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Known secondary structure (DSSP) ----------------------------------------------------------------------
 .........80.........90.........100.........110.........120.........130.........140
Sequence VLFFTTGDLEKIQDKAVWFLRITNPADDKKKASQQDGNDNDIIFGEITPNTVPMLNALMESVYSRQIDHI
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP) ----------------------------------------------------------------------
 .........150.........160.........170.........180.........190.........200.........210
Sequence ITEKIQFWGVAEEEQVLEFQQHSNKFSSEVREAINLMSPGTEHFKLDYEAISGLSESEKMQHYEMKFNEW
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP) ----------------------------------------------------------------------
 .........220.........230.........240.........250.........260.........270.........280
Sequence INLISSQLNRKDEKDAGPATELIYWRSRMQKITNWSEQLKSKDFQIVKASLQRHKNHDNQRPRGDESLNE
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP) ----------------------------------------------------------------------
 .........290.........300.........310.........320.........330.........340.........350
Sequence AKDNVKYLTTLEKFIEPLYNGTPQQIIDTLPALMNAIKMIHTIARFYNTTDKMTGLFIKITNQMIKNCKD
Predicted secondary structure

SS confidence





































































Known secondary structure (DSSP) ----------------------------------------------------------------------
 .........360.........370.........380.........390.........400.........410.........420
Sequence RILNMIWEQDPAELIEVLGSCIKLYCEYKKCYNDTKEKVADMPKGKTFDFSDAQIFGKFDTFVRRLQKLI
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP) ----------------------------------------------------------------------
 .........430.........440.........450.........460.........470.........480.........490
Sequence EIFSNIQQFNALAKHNLEGMDVLTNKFKKIIDDFKKKGHNLLDTANNKFDRDWVEFNVEISHLDGELQNF
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP) ----------------------------------------------------------------------
 .........500.........510.........520.........530.........540.........550.........560
Sequence IDNNFNRFRNIEYSLKLLHKFQSTIKRDSLKHNLTSRYNAILHNYATELDTIQRVFQDQKSNPPLVRNMP
Predicted secondary structure

SS confidence





































































Known secondary structure (DSSP) ------------------------------------------------
S
TTSS


SSS
 .........570.........580.........590.........600.........610.........620.........630
Sequence PEAGKIIWARHLFQKITGPINIFPENVINSTEIRRYYGSYNTLGKQLTIYEMWFYQDWVNKIEQSKAALQ
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP)

-------------------------TTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence ATLIVRHDENKKLYVNFDLEIMQLIREAKCLDRQGIEIPESARIILLQEDKFKTYYNELLYALKEYERIN
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP) SS




SSS
S
TT



 .........710.........720.........730.........740.........750.........760.........770
Sequence SKIKPICKNLLLPHIEDLDLKLRPGMVTLTWTSMNIESYLYYVHQGLKKLEQLIINVNDIIENRIENNLK
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP) TTT

TTT




STTTT
TTTT
STT
 .........780.........790.........800.........810.........820.........830.........840
Sequence TVSKVVLVHLPNVEVERAVDDLLQTIMLYPLDPHVDPVLPEETKRIKRYYFWYFYQALLNSTQNSLNAMK
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP)

SS



TT


SS

TTT

 .........850.........860.........870.........880.........890.........900.........910
Sequence YRVCGKKIPGANTLQNLKPFFQVEVQLNGDKVTLNPSLQEIQKSINRAATAVLRCSKHLYNWDQQNKDST
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP) TGGGTTSS


STTTT
TT
B

TTSS
S


TTT
STT
S
 .........920.........930.........940.........950.........960.........970.........980
Sequence DKATFYDMIACDKEIVKVILLLTGSIQGTKNKVNEFLSGFTKFEWLCKESIQESIKKFSKNGPTLQNYED
Predicted secondary structure





SS confidence





































































Known secondary structure (DSSP) S

TSTTTTTTTST


 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence QLKKFSQIEEEIEKIVPTYKIGAMELMTHNICTSLSTWAKEWKLQYSQDLHKRARQLLDSLTEQTKMLST
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP)







SS
B

 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence KLSKPVKDIDSLGYVMETLEQIRKEQAEIDMKFNPVQEMYSLLDNYLPGGITDKDEMDARSLLRRNWDIL
Predicted secondary structure

SS confidence





































































Known secondary structure (DSSP) S
SS

TTT


SST
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence IQQAEIKGKEYQHKQAIYLKELKQSIKDFTNQVSIFRRDYEKNGPMVEGISPAEAMERLRRFEDEYDVKY
Predicted secondary structure







SS confidence





































































Known secondary structure (DSSP) TTTSTTSS
S

TTT
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence QMYKINARGENLFGLQNQKYPELEKTDAEIKNLNKLYNLYDSVIKNIQQFKEKSWQDVSKDDLAKMEEDA
Predicted secondary structure







SS confidence





































































Known secondary structure (DSSP) T





SS

BTTTS

SSS
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence GKYGEQCSRLPKDLKEWQAYRDLKNYIDSLREQLPLIISLKKPSIMPRHWEKIKEITNTKLNYENPDQFY
Predicted secondary structure














SS confidence





































































Known secondary structure (DSSP) T



S


SSSSSSTT

TT
S
SS

B
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence IEEIMGAKLLDFREDIEDITESADKQLKIRTGLDEINLYWNDMQFQFGIWGKRDVPCMLNGLIVGTILER
Predicted secondary structure












SS confidence





































































Known secondary structure (DSSP) S
TTTTT







SSSS


TT
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence LEEDQLQLSTFNSQRHVTPFKAEVENLIRTFSDVNDTLDMWVKVQKLWTSLEPVFTGGDIARQMPLQAKQ
Predicted secondary structure







SS confidence





































































Known secondary structure (DSSP) SSS

TTTTTTTSS
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence FQGIDKNWMKIMEKAVETKKVIPCCQNDMLKDFLPDLNRKLEDCQKMLEAYLEGKRKKFPRFYFVSNPTL
Predicted secondary structure










SS confidence





































































Known secondary structure (DSSP)
S
STSGGGGGS
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence LKILSQGSEPTSIQEDFEKLFDAITKVTFESAKDKKNPALKQITQIQQVIGRNEENISLTGYYVKCEGNI
Predicted secondary structure





































SS confidence





































































Known secondary structure (DSSP)


SSSTTTTT
SGGGSSS





SSS


SSS


S
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence EDWLKKLEQNMQQTLKDIASAAAQQVFQVGLKEFVSSQASQIALLGLQILWTSKVNEGLERLSRNERNAM
Predicted secondary structure








SS confidence





































































Known secondary structure (DSSP)
S
SS
S
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence DIKRNEIKEHMNILSSMCLEDLNGAVERTKVETLVTIQVHQKDISMDLKCKDVNDFEWQKQTRIAWKTDI
Predicted secondary structure













SS confidence





































































Known secondary structure (DSSP) TTTS

S


SSTTSTTTTTS
TTT
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence DECIISITDWDSPYSYEFLGAKERLCITPLTDRCYITLAQAMSMYYGGAPAGPAGTGKTETVKDLGRTLG
Predicted secondary structure




























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Known secondary structure (DSSP) T
SS








S






TT



SSSSSTT
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence VFVVVTNCSDQHRYRDMAKIFKGLVQSGLWGCFDEFNRIDLEVLSVVAMQVESITTARKQHMKKFMFPEE
Predicted secondary structure




















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Known secondary structure (DSSP)



TT

T
TTTSS
T
S

TT
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence EIEIELIPTVSYFITMNPGYAGRQELPENLKVLFRGVSMMVPDREIIIKVKLASVGYLQIDLLAKKFNVL
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP)
S


S

B




S
SS




TT



S


T
S
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence YRLCEEQLSKQRHYDFGLRNILSVLRTAGNTKRQEIKSDEEMLLMRSLRDMNLSKLVADDIPLFNGLLAD
Predicted secondary structure



















SS confidence





































































Known secondary structure (DSSP) S


TT


SSS



TTT

TTT
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence IFPKLKEVPKKLYPDVEKKIPEEINAESYLINTPSFQLKIIQLYETCLVRHGFMLVGPTGSGKSTIMKIL
Predicted secondary structure
























SS confidence





































































Known secondary structure (DSSP) T
TT








SSS



SS


TTS
 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence TEVLTKLGSPHKIVIMNPKAITAEQMYGVKSEISDDWIPGVFSTIWAKSNNRALKHTTWITCDGPVDAIW
Predicted secondary structure

































SS confidence





































































Known secondary structure (DSSP) TSS


GGGS
S

B
SSSS
B


S
SS




S


 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence IENLNTVLDDNKILTLANGERIAMTENCKVVFEVENLNNASPATVSRCGQVYVSPTDLGYEAVIEGWIRN
Predicted secondary structure

























SS confidence





































































Known secondary structure (DSSP) GGGSTT

TTS


TT

S

SS

TTS

TTTS
 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence RKASGRAEESDKLGNILRKYLINMRFIELQSKECKEPMMDTSPVISVINILNLLTGCLQYFVQTQRTLSE
Predicted secondary structure

























SS confidence





































































Known secondary structure (DSSP) TTSS
SSTTTSSS




SS


TT



 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence QEYEKFIVYSMAWAIGGIYEAQDRVRFHELLLAKNAPIPQKGKENETVFDYYVSQDYLDWKICSPEEWVP
Predicted secondary structure




























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Known secondary structure (DSSP) TTTGGG

SS



S

SS

GGG

SSSS









 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence PQSLQFSQLLLPTLDSFRAEMLLNFILTQPKSHTCSNSALLIGGSGTAKTSSVLLYCNKFDPQKMLFKRT
Predicted secondary structure


































SS confidence





































































Known secondary structure (DSSP) S

STTTS




S


TT



TTSSTS
TTTB

 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence NFSSATSPFMFQSTIEAECDFKVGKEFAPPGNKMMTIFIDDMSMPFVNKWGDQITLELVRQLIETGGFYM
Predicted secondary structure






































SS confidence





































































Known secondary structure (DSSP)


TT


S
GGGS

SGGGSB

S
SS
S


SSS

SST


 .........2530.........2540.........2550.........2560.........2570.........2580.........2590
Sequence LDKTQRGNQRKMKNLQYIGAMNHPGGGRNDIPNRLKRQFFIFNMILPLSIEGIYGPIIKHMFKQKYFSDS
Predicted secondary structure



























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Known secondary structure (DSSP)
SSS

S


SS




BTTB



GGGGGTS


S
GGGTSTTT


TT
 .........2600.........2610.........2620.........2630.........2640.........2650.........2660
Sequence TYKVIESLTSATIALWNKVKSTMLPTPAKFHYVFNMRELSRIFKGILTCKKDTINDAPKSMKIKPELFLV
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP) S


TTSTT



SS

TTTTT

TTT
SS

 .........2670.........2680.........2690.........2700.........2710.........2720.........2730
Sequence GLWRHEAERVLADKLVNNKDKDTVMGYIQEVSLESFSQIENEILEKYSSEKTFLFCDFLRPDVINEDGII
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP) SSS
SS

SSTSSSS





SSSSS

TTSSSS
 .........2740.........2750.........2760.........2770.........2780.........2790.........2800
Sequence EEEAPKIYEAIDSLTELRKRCNFLLSFYNDRNPSKKMPLVLFDDALKHLLRISRIIRQPRSSGLLVGVGG
Predicted secondary structure





























SS confidence





































































Known secondary structure (DSSP) S
S



S




SSTT







STT


TT
 .........2810.........2820.........2830.........2840.........2850.........2860.........2870
Sequence SGKQSLTRLAGFIGKNLIQQIIVTKTYSDKDLKEDIKKGFDDAGHLGKQVTFLMTDSEVKKEEFLEYINM
Predicted secondary structure



















SS confidence





































































Known secondary structure (DSSP) S
TT





SS

STTS




BGGG
SSS
 .........2880.........2890.........2900.........2910.........2920.........2930.........2940
Sequence VLSTGEIPNLLAKDEREVWLGDISQAYCKEKNLGNIDPPQSELWTYFVDRVRDNFHIMLCFSPVGQKFRE
Predicted secondary structure






















SS confidence





































































Known secondary structure (DSSP) T


TTTSTTTTTTT
STTT


ST

SSSS
 .........2950.........2960.........2970.........2980.........2990.........3000.........3010
Sequence RARKFPALFNECTIDWFLPWPEEALVSVAETFIKNFDKLDTKEETKQELMKHMGNVHLMVNEICDEYYQK
Predicted secondary structure



















SS confidence





































































Known secondary structure (DSSP)
S





TT
SS


TTT
 .........3020.........3030.........3040.........3050.........3060.........3070.........3080
Sequence MRRQVYVTPKSFLSYLNSYKTLYIEKYDELDQQEESFKIGLNKIQEATITINQMEISLKEEEIQLNEATE
Predicted secondary structure


SS confidence





































































Known secondary structure (DSSP)






 .........3090.........3100.........3110.........3120.........3130.........3140.........3150
Sequence KTNQLLANLDKESKKANQKGEEVAATNKQCEIQAEQISKEKEEAERELEAALPALRRAQEAVDSIESKDI
Predicted secondary structure


SS confidence





































































Known secondary structure (DSSP) T

 .........3160.........3170.........3180.........3190.........3200.........3210.........3220
Sequence VELKANKKPLDIIKYIMDAVLVFFKARLSYDESGIQTLGDMNFMKKLKEFEKDSINEETIELLEPYLNQS
Predicted secondary structure
























SS confidence





































































Known secondary structure (DSSP) T
SS

TT




STTTTT

STT



TT
 .........3230.........3240.........3250.........3260.........3270.........3280.........3290
Sequence EFNDTFATKASKAAAGILKWAFAIYEYHQKSKIVKPKRIQVAIAEGRQAIALKELEKAREDLAQIQAYIK
Predicted secondary structure


SS confidence





































































Known secondary structure (DSSP) T


TTTTTTT
 .........3300.........3310.........3320.........3330.........3340.........3350.........3360
Sequence NLKDVYTKQMEEKNELEMKAAKTKKKINTARTLITSLSGEKDRWGKGAQDISDQKRKLVGNVSLSTAFIS
Predicted secondary structure

SS confidence





































































Known secondary structure (DSSP) TTSTT
 .........3370.........3380.........3390.........3400.........3410.........3420.........3430
Sequence YCGPFNAEYRNKLAQQRFVVDMKKRGVPVTPGLELTSFLIDDATIGEWNLQGLPKDDLSIQNGIMVTNSA
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP) T
SS

TT



S


TTTTTS
TT

SS
S
 .........3440.........3450.........3460.........3470.........3480.........3490.........3500
Sequence RYPLFIDPQGQGQNWIRNKLSAITTLSHPKFKDMFLKYCMESGLTLIVENIENEVDPMMDPVLELSKEFK
Predicted secondary structure
































SS confidence





































































Known secondary structure (DSSP) S

SS
T




SS





SS


TT


TT

 .........3510.........3520.........3530.........3540.........3550.........3560.........3570
Sequence LFMTCRLANPSFSPELSAKTTIIDFTVTQSGLEQQLLGKVISKEQKALEDSLNQLLADVNQNQKDLQRLD
Predicted secondary structure











SS confidence





































































Known secondary structure (DSSP)


SSS



S




 .........3580.........3590.........3600.........3610.........3620.........3630.........3640
Sequence KNLLERLINSQGNLLDDTELMDVLNNTKTQAKEVAAKLIDAEIKTKEINEKREQYRPVAIRGSAIYFTMI
Predicted secondary structure







SS confidence





































































Known secondary structure (DSSP) TSSS
TTT
TTT
 .........3650.........3660.........3670.........3680.........3690.........3700.........3710
Sequence EVSLVNWMYNSSLEQFLKLFIESIDLSEKAQLPSNRVKNIISFLTFHVYRYVNRGLFEKDKITFILMMAF
Predicted secondary structure















SS confidence





































































Known secondary structure (DSSP) STT



S

SS
TT

GGG
 .........3720.........3730.........3740.........3750.........3760.........3770.........3780
Sequence KILTTAGTISSGDVSLFLKSQKQISYLEDNQWLNILALSKPFFKELPDLISRSENQWRNWIDKNDPENFP
Predicted secondary structure


























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Known secondary structure (DSSP) TTTT






S
SSS


GGGTSSSTTGGG
SSSSSTTTSS
 .........3790.........3800.........3810.........3820.........3830.........3840.........3850
Sequence IPDFAESINQEKEIGSFISLCLVRSLRNDRTLIATQNFISNVLGKEFTDPISYPIEGIWQESSNMDPVLF
Predicted secondary structure





























SS confidence





































































Known secondary structure (DSSP)


TT
TT
STT
TTSSS






TTS
B

 .........3860.........3870.........3880.........3890.........3900.........3910.........3920
Sequence LLSAGADPTSSIDELAKKKKKFPCEKVSMGEGQERVARQVIMKGFVEGGWVILQNCHLGLKFMEEIETLV
Predicted secondary structure
















SS confidence





































































Known secondary structure (DSSP) B

TT


TSSS


SSS



TTS

TTS
 .........3930.........3940.........3950.........3960.........3970.........3980.........3990
Sequence SPINQIHEDFRLWITCEQHPKFPLGLLQKTLKVTNEPPKGLKAGLYKTFTTIITQEFIDKVDHSNWRSLI
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP) SSSS


TT


B


SS

TTTTTSS


B



SSTTTS
SSTTT

S
SS
 .........4000.........4010.........4020.........4030.........4040.........4050.........4060
Sequence FTICFLHSIVIERKKFGPLGWCVPYEYNYSDLEASLLYIEKYLTNLMSTPQPNSHNLPISMNVVRYMICE
Predicted secondary structure
























SS confidence





































































Known secondary structure (DSSP) GGGS
TTT
SS




TS
SS
SSS



TT
 .........4070.........4080.........4090.........4100.........4110.........4120.........4130
Sequence VQYGGRITDDLDRELFITYGETYLKDGIFGNDYFFPQNPSAELIKYQEYIAKVPTVDNPEVFGLHSNADL
Predicted secondary structure



































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Known secondary structure (DSSP) TTTTSS


STTS

SS








S
TS
SS

GGGGT

TT
 .........4140.........4150.........4160.........4170.........4180.........4190.........4200
Sequence TFRLKESKEMINTVMETRPREEIVQDKAKDMLKNLPPDYNDVEVRELVSKLGGPNPKTSTERGMTVPLNI
Predicted secondary structure
























SS confidence





































































Known secondary structure (DSSP) T



STTS




S

SSTTT



STTS
 .........4210.........4220.........4230.........4240.........4250.........4260.........4270
Sequence FLYQEVTRMQRVIGLVRKTLQDTILAIDGQIIMTPEILEAINAIYDAKVPNSWLYDPSGAEISWLLPNLG
Predicted secondary structure
























SS confidence





































































Known secondary structure (DSSP) TTTTTT



SSS

GGGT

SS






SSSTT
 .........4280.........4290.........4300.........4310.........4320.........4330.........4340
Sequence SWSTSLSDRNKQLNDWLRSGQRPILFWLTGFFNPQGFLTGMKQEVTRNHKKEAWSLDDVVYSTTVKEREK
Predicted secondary structure






















SS confidence





































































Known secondary structure (DSSP) TTTTT



SSGGG
S
S



S
TTT

S
 .........4350.........4360.........4370.........4380.........4390.........4400.........4410
Sequence EPAEGVYIKGLYLEGCKWSKNGLDDSDPKKIFADLPILHVSAINKSNTYLCPVYKYPKRTDKYLIFRVGL
Predicted secondary structure


































SS confidence





































































Known secondary structure (DSSP)


SS



SS
SSS




SS



TT






BSSTT

STTB



 .........4420.........4430...
Sequence PCEGSNNPSHWKLRGVALLCSTE
Predicted secondary structure








SS confidence






















Known secondary structure (DSSP)


TTS
T

SS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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