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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c6zywB_

Fold library idPDB HeaderMoleculeTitle
c6zywB_8.78PDB header: motor proteinChain: B: PDB Molecule: outer arm dynein beta heavy chain;


Added to library: Sat Jan 23 19:23:13 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DSPEDFIINRLSQALGIQKEKIKKSLETQQDDKGEVTNKDEFQGFIQQDNSTNILWVSGQSEKCTFYYGQ
Predicted secondary structure

SS confidence





































































Known secondary structure (DSSP) ----------------------------------------------------------------------
 .........80.........90.........100.........110.........120.........130.........140
Sequence LPPIDKFKKKGIAVIKLGLHKLTNENVAKDVVVVEITNNLLEHLNSVFNEIMSPVMQNPLNQQGWTDLVA
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP) ----------------------------------------------------------------------
 .........150.........160.........170.........180.........190.........200.........210
Sequence KDLMEKFNNYVAQVYVLLGQIKGKTMLPLPSHKLTSSDTTPDKDKAHVFEGSIITWTKQIKNVLKLEPEQ
Predicted secondary structure


SS confidence





































































Known secondary structure (DSSP) ----------------------------------------------------------------------
 .........220.........230.........240.........250.........260.........270.........280
Sequence LLKYGNDPGPLAEIEFWQNKRDNLNLIDSQLKSVEVQNILHFLDNNKSTYTTPFTKLQAEVKKARLEANE
Predicted secondary structure

SS confidence





































































Known secondary structure (DSSP) ----------------------------------------------------------------------
 .........290.........300.........310.........320.........330.........340.........350
Sequence NYRYLFTLKDLFSKLQESQPSDFPTLYELFIPIMHTILLIYNKSKTYNQPPRLVVLIREICNAIISNAQA
Predicted secondary structure

SS confidence





































































Known secondary structure (DSSP) ----------------------------------------------------------------------
 .........360.........370.........380.........390.........400.........410.........420
Sequence FVDKDTIFSLIDSKETTEACDKLQVTLDVCSKFKDAYFEYKAKAGGNWKLTSNALFVRLDSFLERCQDIL
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP) -------------------------------------------------------------------
 .........430.........440.........450.........460.........470.........480.........490
Sequence HLTNTIVQFNKLEKIELGGTKGKTLTESIAQIFKEFEEAVQAFTSVSYDIMNIAEKKFDDDFYEFRSKIK
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP)


SS
GGGSTTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence ELERRLASVITQGFDDYDTIYGRFKLLDNFEGLLTRPIIADELEKKHIVLLEMYKQDLKQVQSIFLEGKQ
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP)
SSTTSGGGG
TTS

S
 .........570.........580.........590.........600.........610.........620.........630
Sequence FVDSMHENAPLFLNMPPIAGALTWCKSLRDRIQEPIEKLAQLGQGITEREEYKDVQKLYTSITKSIKDYE
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP) SS


SS


SS
SS
SSTTS
SS
 .........640.........650.........660.........670.........680.........690.........700
Sequence DQKILSWEKEVEDSSQDKLKQTLLCKDENDLIKVNFDPSLVRLLKEVKYFLLLRLEVPTTAKDIYTKAET
Predicted secondary structure


SS confidence





































































Known secondary structure (DSSP) S






S

SGGGSSS



STT



 .........710.........720.........730.........740.........750.........760.........770
Sequence YRTQIVALDMIVDNYNHIKTCLLPVEEPLVKKKIQDMEEEVKPGIEEIRWKSTNIDQFISKSKSIVDQLF
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP) TTTSTTTT






GGGGGTGGG
S


S
 .........780.........790.........800.........810.........820.........830.........840
Sequence ETVNKMKDSLQKIHKSLANFNVKIIERKNRPMSPDDYDQFLKAIFSNKLTIVKDNGNQIQKLVKEVLDAV
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP) S



T
 .........850.........860.........870.........880.........890.........900.........910
Sequence KADKKQNSWKNYNDYVNVIVIEGISTAIQTALLHLNEQINPVFIKRNDISPLFDIRLELGQSGIQFDPEI
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP)

SSTTS
TTSSS
S

S


TTSS
T
 .........920.........930.........940.........950.........960.........970.........980
Sequence GESSNQLTVRNTIRNWINDFFNIAGTIQRLDTTMPGDFLQEIRSFFEIKQCLAMITQNLEWIENECNQFR
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP) TTTSS

SS


S



STTS
S

T
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence ARFDTYSYLWTEDENPLLKGCRAKIPNLDLFDEKITHLKAIQQEISRIKTPEDISWLRINLQPMKTALDA
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP) TS









S
S



SSS
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence RVTRWIRVYTDFLVNQFRTTQKNLLDFIEKTKDGIKKNPADHENLHDKKLLMSVMKVISDVKDVEPRREG
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP) TTS

S
TT
S
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence IITRMKEMVTKLKKHNVPITEKGTDDPLQQIDNANSNFIEIYGRVFKVKADIIPLQAEETQNIKRDLDIF
Predicted secondary structure



SS confidence





































































Known secondary structure (DSSP) TTTTT

SS

S

 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence MKEVESFRKEFMQKLPFDYTESMGYENINNAYDTIMVYYHKLTAIEGRALEYNNLEKLFELQKSNYKQLK
Predicted secondary structure






SS confidence





































































Known secondary structure (DSSP) TTS
S

SSS


TTTS


S
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence DCMNDLKNLKTMWDAIALIHFQYNDWKTKPWRQIKADILLDTNKTLGTQIKNLPKEIRNFKGYNVIVEKV
Predicted secondary structure

SS confidence





































































Known secondary structure (DSSP)
STT

TTT

SSS


S
S
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence KNMGTVLPLVSALHSEFMEDRHWSQLKQITGTVFDHNSLSFYFEDILALNLYKYENTVNEIVDVAQKEAK
Predicted secondary structure















SS confidence





































































Known secondary structure (DSSP) TSTT

T


SSTTTT

SSSTTTS
TTTT
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence IEKKLKNIEQWWSKQVFEFTEYKETKTFASLDNMMEVLDQHSLDLMGMKSQGKYVEFFYDRVEDWREKLG
Predicted secondary structure











SS confidence





































































Known secondary structure (DSSP) TT



SSS


SS
GGGGGT
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence RVDVVVNEWLKVQKNWKILYNIFLLSEDIRMQLPEDTKVFEGVDKEFKDMMSEVSANPSVVEACTIERRD
Predicted secondary structure










SS confidence





































































Known secondary structure (DSSP)
S
S




TT

 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence VLVGWSQAIKKCEKALNDYLEQKKKSFPRFYFLSNQSLLTILSNGQNAPKVCEYLGDCFDGLKTLTFEPP
Predicted secondary structure



















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Known secondary structure (DSSP) T
GGGGSS
TTSSS
SSS
S
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence ANPAETSKVGIGMISKDDEKVPFSSKFICEGAVEHWLLNLEFRMRETLQEILEGAKNTADLWDSGDKPRE
Predicted secondary structure



























SS confidence





































































Known secondary structure (DSSP) SSS
S
S
BTT


SS

B

S
T
SS

 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence EWVEGYNAQIALLTTTIVWTEDVGRAFEDLAGGSETAMKECQKLIEVRLENLIKKVRGDLHILERWKIIN
Predicted secondary structure









SS confidence





































































Known secondary structure (DSSP)
S
STTTSSS

TT



TT


T
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence IITIDVHSRDVVEKFVIQKVSEAESFAWLSQLKFYWENKNKCIIRIVDWFRFYSYEYIGNAIRLVITPLT
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Known secondary structure (DSSP) T


TT
S








SS


















 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence DRCYITLTQALNLTMGGAPAGPAGTGKTETTKDLGRAIGIPVMVFNCSDQMNKDSMAQIFMGLSQSGAWG
Predicted secondary structure























SS confidence





































































Known secondary structure (DSSP) TT


STTSST




SS

T
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence CFDEFNRISIEVLSVVSTQVKCVLDALKEKKTKFSFEEGEIQLQDTVGFFITMNPGYAGRTELPENLKAL
Predicted secondary structure
























SS confidence





































































Known secondary structure (DSSP)
TTSS
TT
S
STT



S








S





 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence FRSCAMVVPDLALICENMLMSEGFTMARVLSRKFVSLYMLSRELLSKQKHYDWGLRAVKSVLRQAGKLKR
Predicted secondary structure





















SS confidence





































































Known secondary structure (DSSP)






TS



S


SS



T
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence GDPDMPEDPLLMRALRDFNMPKIVTDDKVIFRRLIGDLFPKLDPPTKQNPELKKIVQDTTKKDMGLVAEE
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP)


STTGGGS

TT







TTS
S


 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence LFVTKVVQLAEILEVRHCCFVIGPPGSGKTCVWKTLIKSYINSGEDAEYDTLNPKAVTSDELFGAYTKTK
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP) SS



B

TTSSSS


GGGS



 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence EWKNGVIAVIMKNQVKKATHMHKWSVLDGDIDPEWIESLNTVMDDNKVLTLVSNDRIFLTPQMRLIFEIS
Predicted secondary structure





























SS confidence





































































Known secondary structure (DSSP) S


SSS
S


TSSS
B


TTT


B

TTB

BS
 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence NLRNATPATVSRAGVLFINETDIGWMPYMNSWLERSQINILKQQKEMAAKSVFYRCFQSYFEQNIDVHDK
Predicted secondary structure

















SS confidence





































































Known secondary structure (DSSP)

TT

S





GGGS






SS






 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence NRCPMVDIAMIQTICTILDALLIQHLEAFFIFAGLWAIGGPVGGGQDDSFNTVWKGAAKVKFPEQGLCYD
Predicted secondary structure





















SS confidence





































































Known secondary structure (DSSP)

BSS


S

TTTB

SS

S

S
TT
 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence YYYDINENKWNTWKVEDYLPNDQPLFSKIYVATIHTTRLRYMIDIHLQRRKPILFIGSAGTGKTAVVRDY
Predicted secondary structure





































SS confidence





































































Known secondary structure (DSSP)



SSS

S







STTT
SSS






T

B

B

TTSS
 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence LNSTRPEQVSHKTINFSSFTDSLALQKNIESMVEKKNGRNYGSATNKVLICFIDDFNMPYVDKYGTQSPI
Predicted secondary structure







































SS confidence





































































Known secondary structure (DSSP)
TTT




B


TT



B
SSSSB


TTSS

B

BS
SS
S


TT


 .........2530.........2540.........2550.........2560.........2570.........2580.........2590
Sequence QLLRLILDYGSIFNREQLEERKFLQDLLFFGCLNQKSGSFTVDLRLQRNFSVFSMYTPSSDVIKTIFGSI
Predicted secondary structure





























SS confidence





































































Known secondary structure (DSSP) SB


SSSS



B

S
B

B
B









TTSB







 .........2600.........2610.........2620.........2630.........2640.........2650.........2660
Sequence LNAHLSTIDDKAQKMAFKLVEATYFTFDKILKNAPSAKRFHYQFNFRELARVCEGICRTTPGQYSGGDQG
Predicted secondary structure

























SS confidence





































































Known secondary structure (DSSP) S





TTS
TT



TS
S




S
 .........2670.........2680.........2690.........2700.........2710.........2720.........2730
Sequence KLVRLWAHEMKRTFEDRFIANEHVEFFRRYLTEAISKCIGEFPETENPIAEPLIFTGFVAAHTQCTIPVL
Predicted secondary structure
























SS confidence





































































Known secondary structure (DSSP) TTT

STTS
SSSSS

SS

B

TTTSTT


B

 .........2740.........2750.........2760.........2770.........2780.........2790.........2800
Sequence KRVLDDKLEEYNEVKAQMNLVLFQQAMEHVSRICRILDMPGNNALLVGVGGSGKQSLCRLSTFINGFEID
Predicted secondary structure



















SS confidence





































































Known secondary structure (DSSP) S







S
SS



SS
T

 .........2810.........2820.........2830.........2840.........2850.........2860.........2870
Sequence QLVVTASFTINDLRNNLQEIYKKIAKPNSIARVFMITDSQIKEEQFLIPINDMLNSGWIFDLFPKEDMDS
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP)



S


TTTS



TTT

SGGGTSS
BTTB
 .........2880.........2890.........2900.........2910.........2920.........2930.........2940
Sequence LVSGVRNEAKGEGVDVNNLTALTSYFLDKIRKNLKVVLCFSPVGDTMRIRSRKFPGIINNTSIDWFHPWP
Predicted secondary structure
























SS confidence





































































Known secondary structure (DSSP) T

TTT
S


TT
T
S








 .........2950.........2960.........2970.........2980.........2990.........3000.........3010
Sequence HEALIDVAFRFLEEQSISLNMAKVHSSIRYNYTTPKSFLELIDFYKKLLTEKRETIQRQIQRYEMGLNIL
Predicted secondary structure




SS confidence





































































Known secondary structure (DSSP) GGG

TTSS


 .........3020.........3030.........3040.........3050.........3060.........3070.........3080
Sequence AETQNKVQGLQEELKVKMVEVNKQREETDILIEKVGKESALAEEEQTIANAEEEKTNVAAAEAEKISKEA
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP)
 .........3090.........3100.........3110.........3120.........3130.........3140.........3150
Sequence TEALAEALPALRSAEAAVDCLKKPHVTEMKNLGSPPAGVIVTARVVLILFNQGITVWKKAVTFMNNPQFI
Predicted secondary structure
















SS confidence





































































Known secondary structure (DSSP) T

T
SS

TT




STT
 .........3160.........3170.........3180.........3190.........3200.........3210.........3220
Sequence DKVKSFDGENIEPNIIEQSNKIIQDPSKKFNEKDMAGQSYAASKLCAWAVNIVTFNKIFKQVKPLQDAQK
Predicted secondary structure













SS confidence





































































Known secondary structure (DSSP) STT

STT

GGGTT


STT
 .........3230.........3240.........3250.........3260.........3270.........3280.........3290
Sequence QANEILEEKKKELAIVKQRVAELNARVNSLKRQLEEAEARKMIVEQDAARCQSRLSAAENLVNGLAGENK
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP)
 .........3300.........3310.........3320.........3330.........3340.........3350.........3360
Sequence RWTQNVKFLKENIKSMIGDSLLASAFVSYIGAFSAKLRLELWKNTWLPDIITEGIEPLKILTTEAIKSKW
Predicted secondary structure













SS confidence





































































Known secondary structure (DSSP)
TTS
TS
TTT



SS


 .........3370.........3380.........3390.........3400.........3410.........3420.........3430
Sequence KNEGLPADPMSLENAAIITACARWPLIIDPQLQGSTWIRGKQGENLTTISLSQPKWLGALTSSISSGRAV
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP) TT



TT

SS
B
SST




B

SS
TTT


 .........3440.........3450.........3460.........3470.........3480.........3490.........3500
Sequence LIEGIQQEIDATLDPLLQRAVKKNGNQLQLEIGGDPIDYDPNFKLFLMTKLINPHFRPEIAAQCTIINFI
Predicted secondary structure





















SS confidence





































































Known secondary structure (DSSP) B



TT


TTTTT

TTSSSS

TT





B
SSSSS

S


 .........3510.........3520.........3530.........3540.........3550.........3560.........3570
Sequence VTESGLEEQFIAMVVNIEKNELEMAKQDLVKKQNEYAVTLDKLESDLLQSLSEADPATILDNTELIQNLD
Predicted secondary structure












SS confidence





































































Known secondary structure (DSSP)


TTTTSS
TT
T
 .........3580.........3590.........3600.........3610.........3620.........3630.........3640
Sequence KTKKTTIEITEQQQKAKVTEAEINIQREHYRVVAAEGSMLYFLVISLSVMDHMYQYSLESFITFFFKAIN
Predicted secondary structure








SS confidence





































































Known secondary structure (DSSP) TTTGGGGGSTT



 .........3650.........3660.........3670.........3680.........3690.........3700.........3710
Sequence RTTVRDENRIPTLILNIRQTIYQWISRGLFEKHKLIFLTLIVFRLMDVAYEVAEMDFLIKCENTLDWLPN
Predicted secondary structure















SS confidence





































































Known secondary structure (DSSP) TT





TTS



S
TT
TT


S
SSS
 .........3720.........3730.........3740.........3750.........3760.........3770.........3780
Sequence ISWDQIQGLINLEEFRNFAHQLEKEAPNRFKDWYNELQPEDQKLPLDWKRLDSMPFKKLLVLRCLRPDRM
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP) TSTTSSTTTTSSSSTTTTT

S
SSSTTTT
GGG
 .........3790.........3800.........3810.........3820.........3830.........3840.........3850
Sequence TISLNNFIRAVLPQGDAFVEMDQKLESVINEDSESTIPIFFILSPGSDPVKEVEKIAKKKRIEPGKNFFN
Predicted secondary structure





























SS confidence





































































Known secondary structure (DSSP) S

S
SSSS





S

SSS



TT

TT

TTSSSS
 .........3860.........3870.........3880.........3890.........3900.........3910.........3920
Sequence IALGQGQDEIARRRIEEGNKEGHWVMLQNIHLMPTWLIELEKILDSYGGNSEFRLFLSAEPSTGIPIGIL
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP)

SST


GGG





TT


S
SS

 .........3930.........3940.........3950.........3960.........3970.........3980.........3990
Sequence DRSIKLTNEPPAGLKANMKRAWTYFSKEEIEDKDPKIKSILFALCFFHSTLIERRRFGPKGWNMSYPFNM
Predicted secondary structure

























SS confidence





































































Known secondary structure (DSSP) SS







S
S



TT
TTTTSSS




 .........4000.........4010.........4020.........4030.........4040.........4050.........4060
Sequence GDLRDSYLVMNRYMEQNQKVPFNDLIYIFGEIMYGGHIVDDWDRRLCNSYLFNTMHEQLFVPGQNPYEKY
Predicted secondary structure























SS confidence





































































Known secondary structure (DSSP) TS





TTTTT

SS

S





SS
 .........4070.........4080.........4090.........4100.........4110.........4120.........4130
Sequence IEHIETSLKQETPLAYGLHPNAEIGFRTDQCKTLFNTLLIKSSNEMASDLIKQLLEDSELKNKIFNMEDA
Predicted secondary structure



























SS confidence





































































Known secondary structure (DSSP) S
SS

T

S


TTTTS






 .........4140.........4150.........4160.........4170.........4180.........4190.........4200
Sequence ENKGPYQNVFLQEIEYMNALLSEIVKDLEEIGQGLSGLLTVSENMEMIIESIALSRVPASWQKLAYPSKR
Predicted secondary structure






















SS confidence





































































Known secondary structure (DSSP) S
S
SSS



TS





S
 .........4210.........4220.........4230.........4240.........4250.........4260.........4270
Sequence GLQSWLANLFQRIEQLNIFRDDPYSIPRVVMISRFFNPQSFLTAIMQVISRAKAYELNKLYIQTEITKRS
Predicted secondary structure


















SS confidence





































































Known secondary structure (DSSP) SSTT
SSSTTTT



TT
S
T

TTT
SS


 .........4280.........4290.........4300.........4310.........4320.........4330.........4340
Sequence IAAKEGAYVYGFILEGARWDYQLGQLEESKPKEMFSVLPVTYCKAIPLPPEGKEDKSLYQCPVYKTEDRG
Predicted secondary structure







































SS confidence





































































Known secondary structure (DSSP)


S







S

TT



SSS
S



SSSSS
SS
TTT


SSSS

 .........4350.........4360.........4370
Sequence NTYVFTAQLKTRFPPRKWILAGVAIIMDVE
Predicted secondary structure








SS confidence





























Known secondary structure (DSSP) S

S


SS
T
S



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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