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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c6zywA_

Fold library idPDB HeaderMoleculeTitle
c6zywA_8.78PDB header: motor proteinChain: A: PDB Molecule: dynein-1-alpha heavy chain, flagellar inner arm i1 complex


Added to library: Sat Jan 23 10:38:27 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PQPLVWTQLKQTGTTQPTARSGHTIITVGKTHIMFGGLDNDKNNYKDGKIAPNNQVFTLKLTQNNCEWRQ
Predicted secondary structure










































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Known secondary structure (DSSP)





B

SS


TT

S
STT







S
TTT



TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence IACQGDVPLPRCYHASCAISADKMLVFGGSYTSNLRFNDTYILKTTSYQWSKPAPQPRYGHSATFFEGKV
Predicted secondary structure












































SS confidence





































































Known secondary structure (DSSP)



S


SS

BS
TT

TTTT


TTTT





S

SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence YIFGGHGGINYQRLAFNDLYVLETENFEWTRLEPKGNPPDPRGGHSAAMMANKPQLMIFGGWSFTSQYSN
Predicted secondary structure



















































SS confidence





































































Known secondary structure (DSSP)
TTT


TTTT



SS



BBS

SSSS

B
SS




 .........220.........230.........240.........250.........260.........270.........280
Sequence IMIYDIEKDEWVDPEIAHEIPKWNLSGIMAPSIPSWKYFIFGGSVGSFEEGGNRTNSRFVDDSFVLDIDT
Predicted secondary structure





















































SS confidence





































































Known secondary structure (DSSP) TTTT



BSS


SS
TTTT





SSS





B


TTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence LSWSSINLEADETSKAVCKPRPRESASIFYDSGESRAIVFGGWANNWLNDLWALNVSTITKVLIEGDGFK
Predicted secondary structure































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Known secondary structure (DSSP) TB

B


SSSS
STTS



SS
SSSS
SSS


S







GGGT
 .........360.........370.........380.........390.........400.........410.........420
Sequence DTQNISVKFSGGKLEKEVNGTFVNEKEISCETPTFDYPRSVEVTVCMNKGDYTITKSFTYKADKTIAYGP
Predicted secondary structure

































SS confidence





































































Known secondary structure (DSSP)




SSSS


TTTT
SS
S

SSSB
TT

B


SS
SG
 .........430.........440.........450.........460.........470.........480.........490
Sequence GLLTENLIGVQTTIVIQARNKNDQNRESGSDEFVVTIRNPAKIKKEEEVKEGDKANTKNTIKEDEEEENY
Predicted secondary structure









































SS confidence





































































Known secondary structure (DSSP) GGTTTTB



S



TTS


SS




TT
TTTS


 .........500.........510.........520.........530.........540.........550.........560
Sequence ISKQLKDIQEFIENTKENIEIRNKNIRENVSELINVMINLEKVRVKNDDDVLTLDTVEEMLNFLKKKDFG
Predicted secondary structure









SS confidence





































































Known secondary structure (DSSP) TTS

TTTTTTTTSSSSSSSS
 .........570.........580.........590.........600.........610.........620.........630
Sequence KDSDIKKCKKLQEEWKNLAKMAQAVKKDIQNPVKTESDKTKENIKKFEEITLKEYANSLKKESFFIYKTG
Predicted secondary structure










SS confidence





































































Known secondary structure (DSSP)

T
TTSSSSS
 .........640.........650.........660.........670.........680.........690.........700
Sequence VSESFKRIGEVKQKVDEFEVQLNQYEDFARMFEFPDAVIGSKKLMEQIRTDVSSVEKLWVRIEISEKTMD
Predicted secondary structure









SS confidence





































































Known secondary structure (DSSP) S


TTTS
TT
 .........710.........720.........730.........740.........750.........760.........770
Sequence EYKKMKWGSINSMDMEDEIKKLRKALTDLRGIDKRSNAFIGITEELKKWATFLPLLGELKDPSMNSRHWK
Predicted secondary structure














SS confidence





































































Known secondary structure (DSSP) TT
BGGG

S
TSTT
-
STTS
 .........780.........790.........800.........810.........820.........830.........840
Sequence KLKDLVKKEFDVSQELMLEIIWDLKLFDYKDGIEEITDQAKQELKMEKALKKIIDFWRDIEFELVQHKNT
Predicted secondary structure


















SS confidence





































































Known secondary structure (DSSP) T



TTTT
BS
TTTT




SST
 .........850.........860.........870.........880.........890.........900.........910
Sequence DIHTLKMSEENFETLEDHQLQINNMLLSKYVAYFEKEVEKWKYDLGSVYDVVQLLLEVQKTWSFLENLFI
Predicted secondary structure











SS confidence





































































Known secondary structure (DSSP) T


TTSS
TTTTTSTT
 .........920.........930.........940.........950.........960.........970.........980
Sequence QSEEVKRELPNESAQFVGIDKDMKEIMQKGCDIKNCLKFCTIEGMLKRLENIQAQLKVCEKALNEFLDSK
Predicted secondary structure









SS confidence





































































Known secondary structure (DSSP) SSTT
TS
SS

ST
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence RRAFPRFYFVSVNDLLDILSNGNSPAKINRHMSKIFQAIDNLQLKEDSSGGRPTALKMISCVGTEEVDFS
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP) SSSTTSS

SS
TTTSSS




SSSS

TTTS


SS





S
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence SPRLLQGKVESYLKDVIDTMIGTLKSVANSSFKNFQSMTRKEWLKSDPSQITLLVNNIIWSKAVEDCFLK
Predicted secondary structure









SS confidence





































































Known secondary structure (DSSP)





SSSSS




TTTS
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence LQMKLFLDESIKQLTELIGMVQGDLSKPLRQKIMCLITIDTHSRDVVHRLINEHVRKAEEFQWQSQLKFY
Predicted secondary structure

















SS confidence





































































Known secondary structure (DSSP)


TTT


SSS


T


TT
S
B

 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence WVDNDAKIKIADARFVYNYEYLGNGPRLVITPLTDRIYVTATQALHLKMGCAPAGPAGTGKTETTKDLAN
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP) TT

SS
















TT

S
TTSS
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence ALAKACYVFNCSSEMNYESMGNIYKGLASSGCWGCFDEFNRLLPEVLSVCSVQFKAVTDAIKQNVERFII
Predicted secondary structure


















SS confidence





































































Known secondary structure (DSSP) TTS




B

TT


T



BSSTTSS
TT
S
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence EGDEISLDPTCGVFITMNPGYLGRAELPEGLKALFRPITVVVPDLELICENMLMAEGFIEAKILAKKFVT
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP) TT

SS



B












TTS
S



TT
SS
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence LYMLCRDLLSKQLHYDWGLRAIKSVLVVAGGFKRSEPEIAEQALLMRALRDFNIPKIAFQDLYVFHGLLG
Predicted secondary structure














SS confidence





































































Known secondary structure (DSSP) S


TT



T



TTTTT

T
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence DLFPGINIKPKKDLDFEKIITDVCIENKLDPDPEFVLKVVQLSELLAIRHCVFVMGPPGAGKSTTWKILA
Predicted secondary structure
























SS confidence





































































Known secondary structure (DSSP) TT
SS








TT




S
SSTTSS
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence KAQDKTNKKTTLIDIDPKVVSTKDFYGYNLPSKEWKDGLFSKMLRSLAEQPDTNPKWICLDGDLDANWIE
Predicted secondary structure
































SS confidence





































































Known secondary structure (DSSP) SS




B

STTS



TTTT




S
S
S



B

S


G
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence SMNSVMDDNKILTLANNERIPLKPHMRALFEIRDLRFATPATVSRAGILYISDEVGYQWRSYVKSWIKQE
Predicted secondary structure


























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Known secondary structure (DSSP) GGSSS




SS






TT





SSS
TS




TT
S
S
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence FSQDQEMSKNLDTLFGKYVPDTLDHIKKHCRFLVPVSPISQVISICKSLQTLLKEYLFVYALIWAIGGAL
Predicted secondary structure













SS confidence





































































Known secondary structure (DSSP)


STTTT


SS



TT



TSSS
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence AEKDSIDYRKDFSTWWKVKFPSKGTIFDYYVDQSSSKFVEWSKRLENKEFDPQVETMGNITVNTIETLAT
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP)





S

TTTT









S












GGGG
SS





 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence TEFIKSYLMVKHPSLLIGNSGCGKTQLAKGILKEIENYAYQLINFNYYTDSTYLQGQIEQTLEKKAGRQY
Predicted secondary structure



























SS confidence





































































Known secondary structure (DSSP) TT








B

SSSST







TT

TT



SSS

B
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence GPPGKVQLIYFIDDLNMPQLDAYDTQTAIALLRQLADYGHFYDVSKLALKDIINTQVLAAMNPSAGSFFV
Predicted secondary structure









































SS confidence





































































Known secondary structure (DSSP) S
SSSS

S

S
S


TTS

S

B
TTT

B

B
S


B








 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence NPRYQRHFWTISIPFPDNESLSLIYITFLNGHLKRFKSTIQEYSNIIVRASLMLHQAVTQNFRKTAINFH
Predicted secondary structure

















SS confidence





































































Known secondary structure (DSSP)
TTS


B




S






TTT
TT
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence YEFNLRHMSNVFQGLLLSDPNKFTEPDKLIKLWIHECERTYGDRLVSTDNLKTYKENIFDIVKKSFSKFN
Predicted secondary structure













SS confidence





































































Known secondary structure (DSSP)



TTSS







TTTS

SSSS
S
 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence FSRYFGNNPENLIYCNFIAGINSDRFYDQMPNNEMEKHISEALKEYNDNNAFMGLVLFEDAMKHVCRICR
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP) SSS
SS

TTS
SS












S







 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence IVLPSSGHALLVGVGGSGKQSLSKLASFIMGYTTFSITISATYSMVDLRNDLQQLYFKCGPKEEGILFLF
Predicted secondary structure























SS confidence





































































Known secondary structure (DSSP) TTTT


S
SSS
T
B

B


SS


TTT


B

B
 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence TEGQITNERFLVYINDLLSSGEIAELYTLDEKEAMINQVRAKVKGEGKPDTRENCWNWFIDQVKKNLHMA
Predicted secondary structure






















SS confidence





































































Known secondary structure (DSSP)
STT

SS

TTSS





SS





 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence ICFSPVGDMRRRARQFPALVNCTVIDWFQPWPYEALFNVAKSFLEPVDEAVVKFMPFSFTLVRYAYTTPK
Predicted secondary structure





















SS confidence





































































Known secondary structure (DSSP)
SS



S








ST








S


 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence SFLELISLFTNMLAQKRESLERNKERYETGLVKLKETAEQVAIIEVEVKEKQVEAEAKKKEADAFAEVVG
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP)




 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence REKDKVEKENSKATIEADKCGLIKQNVEAQKSSTQQDLDAAQPLVEQAKSALNSISKKDFQQAKSFASPP
Predicted secondary structure







SS confidence





































































Known secondary structure (DSSP) TTTTS
T
SS

 .........2530.........2540.........2550.........2560.........2570.........2580.........2590
Sequence AGVPEVFAATIYLLAGYFNSWKSSLKLMKSPEFMEKLLNFDANQVPAANVNIVKNQYLNMPSFTPEQMAS
Predicted secondary structure























SS confidence





































































Known secondary structure (DSSP) STT




TTSTTTT

GGG

TTGGGTTTS
 .........2600.........2610.........2620.........2630.........2640.........2650.........2660
Sequence KSAAAKGICSWVVNIVKYYDVIQDVEPKRKALKEATEQLEEATVKLNEVEEVVRKLNEELNKLKAENDKA
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP)
TTS
 .........2670.........2680.........2690.........2700.........2710.........2720.........2730
Sequence IAERNAAISEAERCARRLNLAQRLVTALSSENERWGKSIIQLEDQLKLMVGDVLVASSFVSYSGPFNKKF
Predicted secondary structure


SS confidence





































































Known secondary structure (DSSP) T


TTTSTTTT

 .........2740.........2750.........2760.........2770.........2780.........2790.........2800
Sequence RNIMINQNFMKFMKSPDPNPIKILTDESTIALWNKQKLPSDSVSIENGTILTNSARYPLMIDPQLQGITW
Predicted secondary structure

























SS confidence





































































Known secondary structure (DSSP) TTS





STGGG

TT


ST

SS


SST
 .........2810.........2820.........2830.........2840.........2850.........2860.........2870
Sequence IREKEKANNLKILRLGSKNINRDLELSIENGYSAIIENMNERIDAILMPIIARSFIKRGKNKIIKFAGKD
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP) TSSS

SSSST
S

SS


STTT

TT

BTTB
 .........2880.........2890.........2900.........2910.........2920.........2930.........2940
Sequence LILHPNFKLFLHTKLSNPHYPPEIQAEAALINFTVTEAGLGDQLLSLVVARERPDLAKMKIELITQQNDF
Predicted secondary structure















SS confidence





































































Known secondary structure (DSSP)



TT


SS
S


S

B




S
 .........2950.........2960.........2970.........2980.........2990.........3000.........3010
Sequence KIKLKDLEDELLYKLANAKGDILDDIELIENLEYSKKLSVEIAEKVAAAKITEAKINETSENYRPAASRG
Predicted secondary structure







SS confidence





































































Known secondary structure (DSSP) TTSS

SS
SS
 .........3020.........3030.........3040.........3050.........3060.........3070.........3080
Sequence ALFYFLLSDLSKVHSFYKYSLESFIVVINRAIDAISENRSLKKRVDELIESLTYTAYQTTRRGLFESHKL
Predicted secondary structure














SS confidence





































































Known secondary structure (DSSP) GGGT
SS



T




TTTGGGTTT

 .........3090.........3100.........3110.........3120.........3130.........3140.........3150
Sequence IVAAMLCLRVLLRSEELNSDEVDHLIIGDALKSFLNDNIWAACKALETIHQFQGFCQSLETDVLQWKKWY
Predicted secondary structure


















SS confidence





































































Known secondary structure (DSSP)

STTT
SSS





SSS


TTTTTT
T
 .........3160.........3170.........3180.........3190.........3200.........3210.........3220
Sequence SEEKAETADLPKAFKELSKFHRLLLLRALRPDRLPSALSQFVHDKMGERYIEQPPFNIFETFQETSKTVP
Predicted secondary structure
































SS confidence





































































Known secondary structure (DSSP) TSSSTTTSS
TTS
T

TTS










TT

SSS
 .........3230.........3240.........3250.........3260.........3270.........3280.........3290
Sequence IFFVLFPGVDPTPDVERVAATFDVSANNGRFINISMGQGQEDRAKKALFDCAQKGHWIMLQNVHLMQSWL
Predicted secondary structure



















SS confidence





































































Known secondary structure (DSSP)

SS


TTT

SSTTTT


STT
TT



TTT

SS
 .........3300.........3310.........3320.........3330.........3340.........3350.........3360
Sequence YGLNGLEGFLKTHPNFRVFISSEPPNIIPESILQGSLKIANEAPQYLKANLRRAYNKFDQEFLDKCDKKP
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP)



TT









SS








SS
T
SSS
 .........3370.........3380.........3390.........3400.........3410.........3420.........3430
Sequence TEFKSCLFALCFFHSLMLGRKKFGTQGWSRVYNFNDGDLTICADVLYNYLSKYDQVPWDDLRYIFGEIMY
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP) TTTTTTT

TTT
SS




TS
S


SST
 .........3440.........3450.........3460.........3470.........3480.........3490.........3500
Sequence GGHITDDWDRRTNRTYLKVLIRSELLQQNFNLADPSKFDYEAYRKYIEEKLPIESPQMFGMHPNAEIGYL
Predicted secondary structure

































SS confidence





































































Known secondary structure (DSSP)


GGGS
SSS

S
TTT




S
S
SS

TTTTT

GGGS
 .........3510.........3520.........3530.........3540.........3550.........3560.........3570
Sequence TQTCDQVFNTILEVQGGSSGGGASKKDDGVMVTLTDFKTRCPHDFNMLLIEEKVKEKTPYIVVCLQECER
Predicted secondary structure






















SS confidence





































































Known secondary structure (DSSP) TT

S
S
S
SS
TT
SSGGG
STTS







 .........3580.........3590.........3600.........3610.........3620.........3630.........3640
Sequence MNGLLKEIKTSLEDLRLGLTGALNMTDAMESLQQSLSFNKVPDTWEKKAYFSKKPLSSWFADLIERNIQL
Predicted secondary structure



















SS confidence





































































Known secondary structure (DSSP) TS




TT


GGGTTT



S
SS
 .........3650.........3660.........3670.........3680.........3690.........3700.........3710
Sequence QEWCKELVTPTSLCISYLFNPMSYLTAIMQFTARAQGLPLDGITIQTNVTAVVNPAENGAYIHGLFLEGA
Predicted secondary structure

























SS confidence





































































Known secondary structure (DSSP) TTTSSS




TT
S



SSSB



BS




SSS



B


BS
 .........3720.........3730.........3740.........3750.........3760.........3770.........3780
Sequence AWEIGGQGQDGYLIEQKPKELHPKMPVINAVAVPLDKKKKNGQYDCPTYVTSARGQFTANLNMESDDSDP
Predicted secondary structure














































SS confidence





































































Known secondary structure (DSSP)


BTTB




SSS
S



BB

BSS
S
S

TTT
SSTT







S
 .........3790.....
Sequence NKWILSGTCMLMSDD
Predicted secondary structure


SS confidence














Known secondary structure (DSSP) TT
B






Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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