PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c6yvuB_

Fold library id	PDB Header	Molecule	Title
c6yvuB_	7.50	PDB header: cell cycle	Chain: B: PDB Molecule: structural maintenance of chromosomes protein 4;

Links to external resources
Added to library: Sat Jul 18 12:23:13 2020

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Q S R L F I N E L V L E N F K S Y A G K Q V V G P F H T S F S A V V G P N G S G K S N V I D S M L F V F G F R A N K M R Q D R L S D L I H K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
S
S S
S T T S S T
T T S
T T
G G G S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S E A F P S L Q S C S V A V H F Q Y V I D E S S G T S R I D E E K P G L I I T R K A F K N N S S K Y Y I N E K E S S Y T E V T K L L K N E G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S S
S
S
S S S
S S S S
S
T T S
T T
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I D L D H K R F L I L Q G E V E N I A Q M K P K A E K E S D D G L L E Y L E D I I G T A N Y K P L I E E R M G Q I E N L N E V C L E K E N R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T S B
T
S S
S S T T
T
T T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence F E I V D R E K N S L E S G K E T A L E F L E K E K Q L T L L R S K L F Q F K L L Q S N S K L A S T L E K I S S S N K D L E D E K M K F Q E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
S S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence S L K K V D E I K A Q R K E I K D R I S S C S S K E K T L V L E R R E L E G T R V S L E E R T K N L V S K M E K A E K T L K S T K H S I S E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence A E N M L E E L R G Q Q T E H E T E I K D L T Q L L E K E R S I L D D I K L S L K D K T K N I S A E I I R H E K E L E P W D L Q L Q E K E S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T S S T T S T

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence Q I Q L A E S E L S L L E E T Q A K L K K N V E T L E E K I L A K K T H K Q E L Q D L I L D L K K K L N S L K D E R S Q G E K N F T S A H L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence K L K E M Q K V L N A H R Q R A M E A R S S L S K A Q N K S K V L T A L S R L Q K S G R I N G F H G R L G D L G V I D D S F D V A I S T A C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S T T S S
B
G G G

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence P R L D D V V V D T V E C A Q H C I D Y L R K N K L G Y A R F I L L D R L R Q F N L Q P I S T P E N V P R L F D L V K P K N P K F S N A F Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G G
S
T
S T T
T T T
B
B
S
G G G

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence S V L R D T L V A Q N L K Q A N N V A Y G K K R F R V V T V D G K L I D I S G T M S G G G N H V A K G L M K L K V D D Y T P E E V D K I E R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T
T T G G G T T T T T S S S
S S S
B
S S
S

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence E L S E R E N N F R V A S D T V H E M E E E L K K L R D H E P D L E S Q I S K A E M E A D S L A S E L T L A E Q Q V K E A E M A Y V K A V S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence D K A Q L N V V M K N L E R L R G E Y N D L Q S E T K T K K E K I K G L Q D E I M K I I K L Q M Q N S K V E S V C Q K L D I L V A K L K K V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence K S A S K K S G G D V V K F Q K L L Q N S E R D V E L S S D E L K V I E E Q L K H T K L A L A E N D T N M N E T L N L K V E L K E Q S E Q L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence K E Q M E D M E E S I N E F K S I E I E M K N K L E K L N S L L T Y I K S E I T Q Q E K G L E S E I K D A E T S C L S E D E L R E L D V E L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T G G G G
T T G G G T S S

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . . . . . 1030 . . . . . . . . . 1040 . . . . . . . . . 1050

Sequence I E S K I N E L S Y Y V E E T N V D I G V L E E Y A R R L A E F K R R K L D L N N A V Q K R D E V K E Q L G I L K K K R F D E F M A G F N I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T S S

. . . . . . . . . 1060 . . . . . . . . . 1070 . . . . . . . . . 1080 . . . . . . . . . 1090 . . . . . . . . . 1100 . . . . . . . . . 1110 . . . . . . . . . 1120

Sequence I S M T L K E M Y Q M I T M G G N A E L E L V D S L D P F S E G V T F S V M P P K K S W R N I T N L S G G E K T L S S L A L V F A L H K Y K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S S S S S
T T T S
T T S
G G G S
S

. . . . . . . . . 1130 . . . . . . . . . 1140 . . . . . . . . . 1150 . . . . . . . . . 1160 . . . . . . . . . 1170 . . . . . . . . . 1180 . . . . . . . . . 1190

Sequence P T P L Y V M D E I D A A L D F R N V S I V A N Y I K E R T K N A Q F I V I S L R N N M F E L A Q Q L V G V Y K R D N R T K S T T I K N I D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S T T T T S
T T T
S S
S T T
S S
T T
S

.

Sequence I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group,
Imperial College,
London
Michael Sternberg
Disclaimer

Terms and Conditions

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Q	S	R	L	F	I	N	E	L	V	L	E	N	F	K	S	Y	A	G	K	Q	V	V	G	P	F	H	T	S	F	S	A	V	V	G	P	N	G	S	G	K	S	N	V	I	D	S	M	L	F	V	F	G	F	R	A	N	K	M	R	Q	D	R	L	S	D	L	I	H	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													S		T	T			S									S	S							S	T	T	S	S													T				T	T	S		T	T		G	G	G	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	E	A	F	P	S	L	Q	S	C	S	V	A	V	H	F	Q	Y	V	I	D	E	S	S	G	T	S	R	I	D	E	E	K	P	G	L	I	I	T	R	K	A	F	K	N	N	S	S	K	Y	Y	I	N	E	K	E	S	S	Y	T	E	V	T	K	L	L	K	N	E	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S	S	S		S		S															S	S	S					S	S	S	S		S									T	T	S							T	T																T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	D	L	D	H	K	R	F	L	I	L	Q	G	E	V	E	N	I	A	Q	M	K	P	K	A	E	K	E	S	D	D	G	L	L	E	Y	L	E	D	I	I	G	T	A	N	Y	K	P	L	I	E	E	R	M	G	Q	I	E	N	L	N	E	V	C	L	E	K	E	N	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S		T	T	S	B											T			S	S		S	S	T	T													T		T	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	F	E	I	V	D	R	E	K	N	S	L	E	S	G	K	E	T	A	L	E	F	L	E	K	E	K	Q	L	T	L	L	R	S	K	L	F	Q	F	K	L	L	Q	S	N	S	K	L	A	S	T	L	E	K	I	S	S	S	N	K	D	L	E	D	E	K	M	K	F	Q	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	S		S	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	S	L	K	K	V	D	E	I	K	A	Q	R	K	E	I	K	D	R	I	S	S	C	S	S	K	E	K	T	L	V	L	E	R	R	E	L	E	G	T	R	V	S	L	E	E	R	T	K	N	L	V	S	K	M	E	K	A	E	K	T	L	K	S	T	K	H	S	I	S	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	A	E	N	M	L	E	E	L	R	G	Q	Q	T	E	H	E	T	E	I	K	D	L	T	Q	L	L	E	K	E	R	S	I	L	D	D	I	K	L	S	L	K	D	K	T	K	N	I	S	A	E	I	I	R	H	E	K	E	L	E	P	W	D	L	Q	L	Q	E	K	E	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																							T			T	T															S	S	T	T	S	T
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	Q	I	Q	L	A	E	S	E	L	S	L	L	E	E	T	Q	A	K	L	K	K	N	V	E	T	L	E	E	K	I	L	A	K	K	T	H	K	Q	E	L	Q	D	L	I	L	D	L	K	K	K	L	N	S	L	K	D	E	R	S	Q	G	E	K	N	F	T	S	A	H	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	K	L	K	E	M	Q	K	V	L	N	A	H	R	Q	R	A	M	E	A	R	S	S	L	S	K	A	Q	N	K	S	K	V	L	T	A	L	S	R	L	Q	K	S	G	R	I	N	G	F	H	G	R	L	G	D	L	G	V	I	D	D	S	F	D	V	A	I	S	T	A	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																												S	S		S					T	T	S	S		B			G	G	G
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	P	R	L	D	D	V	V	V	D	T	V	E	C	A	Q	H	C	I	D	Y	L	R	K	N	K	L	G	Y	A	R	F	I	L	L	D	R	L	R	Q	F	N	L	Q	P	I	S	T	P	E	N	V	P	R	L	F	D	L	V	K	P	K	N	P	K	F	S	N	A	F	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G	G					S																T									S	T	T												T	T	T			B						B		S		G	G	G
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	S	V	L	R	D	T	L	V	A	Q	N	L	K	Q	A	N	N	V	A	Y	G	K	K	R	F	R	V	V	T	V	D	G	K	L	I	D	I	S	G	T	M	S	G	G	G	N	H	V	A	K	G	L	M	K	L	K	V	D	D	Y	T	P	E	E	V	D	K	I	E	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	T	T						T	T	G	G	G	T	T	T	T	T	S	S	S							S	S	S		B			S	S														S
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	E	L	S	E	R	E	N	N	F	R	V	A	S	D	T	V	H	E	M	E	E	E	L	K	K	L	R	D	H	E	P	D	L	E	S	Q	I	S	K	A	E	M	E	A	D	S	L	A	S	E	L	T	L	A	E	Q	Q	V	K	E	A	E	M	A	Y	V	K	A	V	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	D	K	A	Q	L	N	V	V	M	K	N	L	E	R	L	R	G	E	Y	N	D	L	Q	S	E	T	K	T	K	K	E	K	I	K	G	L	Q	D	E	I	M	K	I	I	K	L	Q	M	Q	N	S	K	V	E	S	V	C	Q	K	L	D	I	L	V	A	K	L	K	K	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																									T	T
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	K	S	A	S	K	K	S	G	G	D	V	V	K	F	Q	K	L	L	Q	N	S	E	R	D	V	E	L	S	S	D	E	L	K	V	I	E	E	Q	L	K	H	T	K	L	A	L	A	E	N	D	T	N	M	N	E	T	L	N	L	K	V	E	L	K	E	Q	S	E	Q	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	K	E	Q	M	E	D	M	E	E	S	I	N	E	F	K	S	I	E	I	E	M	K	N	K	L	E	K	L	N	S	L	L	T	Y	I	K	S	E	I	T	Q	Q	E	K	G	L	E	S	E	I	K	D	A	E	T	S	C	L	S	E	D	E	L	R	E	L	D	V	E	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																								T	T	G	G	G	G														T	T	G	G	G	T	S	S
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050
Sequence	I	E	S	K	I	N	E	L	S	Y	Y	V	E	E	T	N	V	D	I	G	V	L	E	E	Y	A	R	R	L	A	E	F	K	R	R	K	L	D	L	N	N	A	V	Q	K	R	D	E	V	K	E	Q	L	G	I	L	K	K	K	R	F	D	E	F	M	A	G	F	N	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			S									T	S	S
	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120
Sequence	I	S	M	T	L	K	E	M	Y	Q	M	I	T	M	G	G	N	A	E	L	E	L	V	D	S	L	D	P	F	S	E	G	V	T	F	S	V	M	P	P	K	K	S	W	R	N	I	T	N	L	S	G	G	E	K	T	L	S	S	L	A	L	V	F	A	L	H	K	Y	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														S	S	S							S	S	S	S		T	T	T	S									T	T	S					G	G	G	S																				S
	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190
Sequence	P	T	P	L	Y	V	M	D	E	I	D	A	A	L	D	F	R	N	V	S	I	V	A	N	Y	I	K	E	R	T	K	N	A	Q	F	I	V	I	S	L	R	N	N	M	F	E	L	A	Q	Q	L	V	G	V	Y	K	R	D	N	R	T	K	S	T	T	I	K	N	I	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S						S	T	T	T	T	S													T	T	T			S	S								S					T	T		S	S								T	T									S
	.
Sequence	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)