PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c6wp7B_

Fold library id	PDB Header	Molecule	Title
c6wp7B_	2.40	PDB header: dna binding protein	Chain: B: PDB Molecule: avar1;

Links to external resources
Added to library: Sat Jun 27 10:52:33 2020

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A I R T R Q T I L V A A A E V F D E V G Y E A A T I S D V L K R S G V T K G A L Y F H F T S K Q E L A Q A V L A E Q V A S L P R V P E Q E L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S S T T T T T S
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence K L Q Q S L D E A L L L A H L L R E G T G D P I V Q G S V R L T V D Q G S P R D H L N R R V P X Q A W T E H T Q S L F E E A R A K G E I L P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S T T
S
S S S
T T
B
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence H A D V E A L A K L F V G A F T G V Q V L S R I X T G R A D L A E R V A D L Y R H L X P S F A X P G I L V R L D F S P E R G S R V Y E A A X

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T T T G G G T B
T T

.

Sequence K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	I	R	T	R	Q	T	I	L	V	A	A	A	E	V	F	D	E	V	G	Y	E	A	A	T	I	S	D	V	L	K	R	S	G	V	T	K	G	A	L	Y	F	H	F	T	S	K	Q	E	L	A	Q	A	V	L	A	E	Q	V	A	S	L	P	R	V	P	E	Q	E	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																		T											S	S											T	T	T	T	T	S							S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	K	L	Q	Q	S	L	D	E	A	L	L	L	A	H	L	L	R	E	G	T	G	D	P	I	V	Q	G	S	V	R	L	T	V	D	Q	G	S	P	R	D	H	L	N	R	R	V	P	X	Q	A	W	T	E	H	T	Q	S	L	F	E	E	A	R	A	K	G	E	I	L	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	S	S	T	T														S				S	S	S																									T	T		B		T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	H	A	D	V	E	A	L	A	K	L	F	V	G	A	F	T	G	V	Q	V	L	S	R	I	X	T	G	R	A	D	L	A	E	R	V	A	D	L	Y	R	H	L	X	P	S	F	A	X	P	G	I	L	V	R	L	D	F	S	P	E	R	G	S	R	V	Y	E	A	A	X
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T																										T	T	T	T													G	G	G	T	B						T	T
	.
Sequence	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)