PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c6w6oD_

Fold library id	PDB Header	Molecule	Title
c6w6oD_	3.20	PDB header: transport protein/toxin	Chain: D: PDB Molecule: nachbac-nav1.7vsdii chimera;

Links to external resources
Added to library: Sat Jun 27 08:42:07 2020

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K M Q K I V N H R A F T F T V I A L I L F N A L I V G I E T Y P R I Y A D H K W L F Y R I D L V L L W I F T I E I A M R F L A S N P K S A F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S T T
S
S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence F R S S W N W F D F L I V T L S L V E L F L A D V E G L S V L R I L R V L R V L R A I S V V P S L R R L V D A L V M T I P A L G N I L I L M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S S
S
T T T S G G G S T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence S I F F Y I F A V I G T M L F Q H V S P E Y F G N L Q L S L L T L F Q V V T L E S W A S G V M R P I F A E V P W S W L Y F V S F V L I G T F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
T T T S S S T T T T S S
T T T T T T S G G G

. . . . . . . . . 220 . . . . . .

Sequence I I F N L F I G V I V N N V E K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	M	Q	K	I	V	N	H	R	A	F	T	F	T	V	I	A	L	I	L	F	N	A	L	I	V	G	I	E	T	Y	P	R	I	Y	A	D	H	K	W	L	F	Y	R	I	D	L	V	L	L	W	I	F	T	I	E	I	A	M	R	F	L	A	S	N	P	K	S	A	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S				S																					T	T																																		S		S	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	F	R	S	S	W	N	W	F	D	F	L	I	V	T	L	S	L	V	E	L	F	L	A	D	V	E	G	L	S	V	L	R	I	L	R	V	L	R	V	L	R	A	I	S	V	V	P	S	L	R	R	L	V	D	A	L	V	M	T	I	P	A	L	G	N	I	L	I	L	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S																			S	S	S		S		T	T	T	S							G	G	G						S																		T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	S	I	F	F	Y	I	F	A	V	I	G	T	M	L	F	Q	H	V	S	P	E	Y	F	G	N	L	Q	L	S	L	L	T	L	F	Q	V	V	T	L	E	S	W	A	S	G	V	M	R	P	I	F	A	E	V	P	W	S	W	L	Y	F	V	S	F	V	L	I	G	T	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																T	T	T		T	T	T	S	S	S	T	T											T	T	S	S							T	T	T	T	T	T	S	G	G	G
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Sequence	I	I	F	N	L	F	I	G	V	I	V	N	N	V	E	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	T	T