PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c6vrbC_

Fold library id	PDB Header	Molecule	Title
c6vrbC_	3.00	PDB header: immune system	Chain: C: PDB Molecule: acrvia1;

Links to external resources
Added to library: Sat Jun 13 08:19:04 2020

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M I Y Y I K D L K V K G K I F E N L M N K E A V E G L I T F L K K A E F E I Y S R E N Y S K Y N K W F E M W K S P T S S L V F W K N Y S F R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
S T T T T S S S
T T
S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence C H L L F V I E K D G E C L G I P A S V F E S V L Q I Y L A D P F A P D T K E L F V E V C N L Y E C L A D V T V V E H F E A E E S A W H K L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
T T B
S
T T
T T
T
S
T T S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence T H N E T E V S K R V Y S K D D D E L L K Y I P E F L D T I A T N K K S Q K Y N Q I Q G K I Q E I N K E I A T L Y E S S E D Y I F T E Y V S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S
B
S S
T T S T
G G G G T S

. . . . . . . . . 220 . . . . . . . . .

Sequence N L Y R E S A K L E Q H S K Q I L K E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	I	Y	Y	I	K	D	L	K	V	K	G	K	I	F	E	N	L	M	N	K	E	A	V	E	G	L	I	T	F	L	K	K	A	E	F	E	I	Y	S	R	E	N	Y	S	K	Y	N	K	W	F	E	M	W	K	S	P	T	S	S	L	V	F	W	K	N	Y	S	F	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T								S																					S	T	T											T	T	S	S	S							T	T		S	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	C	H	L	L	F	V	I	E	K	D	G	E	C	L	G	I	P	A	S	V	F	E	S	V	L	Q	I	Y	L	A	D	P	F	A	P	D	T	K	E	L	F	V	E	V	C	N	L	Y	E	C	L	A	D	V	T	V	V	E	H	F	E	A	E	E	S	A	W	H	K	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S	S	S														T	T	B			S		T	T		T	T								T									S								T	T	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	T	H	N	E	T	E	V	S	K	R	V	Y	S	K	D	D	D	E	L	L	K	Y	I	P	E	F	L	D	T	I	A	T	N	K	K	S	Q	K	Y	N	Q	I	Q	G	K	I	Q	E	I	N	K	E	I	A	T	L	Y	E	S	S	E	D	Y	I	F	T	E	Y	V	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S	S			B				S	S								T	T														S	T																								G	G	G	G	T	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Sequence	N	L	Y	R	E	S	A	K	L	E	Q	H	S	K	Q	I	L	K	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)