PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c6vqxD_

Fold library id	PDB Header	Molecule	Title
c6vqxD_	3.15	PDB header: rna binding protein/rna/inhibitor	Chain: D: PDB Molecule: crispr-associated protein csy3;

Links to external resources
Added to library: Sat Mar 14 08:19:58 2020

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence L S T A S V L A F E R K L D P S D A L M S A G A W A Q R D A S Q E W P A V T V R E K S Q T V D V A N L P S D A D T L K V R F T L R V L G G A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S
T T
T T
S S
B
B
T T
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G T P S A C N D A A Y R D K L L Q T V A T Y V N D Q G F A E L A R R Y A H N L A N A R F L W R N R V G A E A V E V R I N H I R Q G E V A R A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S
S
S T T T T S T T T S T T
S
S S S S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence W R F D A L A I G L R D F K A D A E L D A L A E L I A S G L S G S G H V L L E V V A F A R I G D G Q E V F P S Q E L K T L Y S V R D A A A I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S
S S S
T T S S
T T
B
B
B
B S S S S B

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence H S Q K I G N A L R T I D T W Y P D E D G L G P I A V E P Y G S V T S Q G K A Y R Q P K Q K L D F Y T L L D N W V L R D E A P A V E Q Q H Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
S S
S T T
S S
B
T T T
B
S
S S S T T
T T S

. . . . . . . . . 290 . . .

Sequence V I A N L I R G G V F G E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group,
Imperial College,
London
Michael Sternberg
Disclaimer

Terms and Conditions

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	L	S	T	A	S	V	L	A	F	E	R	K	L	D	P	S	D	A	L	M	S	A	G	A	W	A	Q	R	D	A	S	Q	E	W	P	A	V	T	V	R	E	K	S	Q	T	V	D	V	A	N	L	P	S	D	A	D	T	L	K	V	R	F	T	L	R	V	L	G	G	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S								S												T	T			T	T		S	S			B														B			T	T																T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	T	P	S	A	C	N	D	A	A	Y	R	D	K	L	L	Q	T	V	A	T	Y	V	N	D	Q	G	F	A	E	L	A	R	R	Y	A	H	N	L	A	N	A	R	F	L	W	R	N	R	V	G	A	E	A	V	E	V	R	I	N	H	I	R	Q	G	E	V	A	R	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T			S			S																			S		S													T	T	T	T	S	T	T	T	S	T	T		S										S	S	S	S		S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	W	R	F	D	A	L	A	I	G	L	R	D	F	K	A	D	A	E	L	D	A	L	A	E	L	I	A	S	G	L	S	G	S	G	H	V	L	L	E	V	V	A	F	A	R	I	G	D	G	Q	E	V	F	P	S	Q	E	L	K	T	L	Y	S	V	R	D	A	A	A	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	T	S		S	S	S																			T	T	S	S														T	T		B					B					B		B	S	S	S	S	B
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	H	S	Q	K	I	G	N	A	L	R	T	I	D	T	W	Y	P	D	E	D	G	L	G	P	I	A	V	E	P	Y	G	S	V	T	S	Q	G	K	A	Y	R	Q	P	K	Q	K	L	D	F	Y	T	L	L	D	N	W	V	L	R	D	E	A	P	A	V	E	Q	Q	H	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T	T								S	S		S	T	T							S	S		B		T	T	T			B		S		S	S	S	T	T										T	T	S
	.	.	.	.	.	.	.	.	.	290	.	.	.
Sequence	V	I	A	N	L	I	R	G	G	V	F	G	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T