PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c6u94A_

Fold library id	PDB Header	Molecule	Title
c6u94A_	2.35	PDB header: lipid transport	Chain: A: PDB Molecule: rnd efflux system, outer membrane lipoprotein, nodt family;

Links to external resources
Added to library: Sat Oct 5 08:47:56 2019

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E L G W R N F L A D A Q L Q Q L V A L A L A N N R D L R V A T L D I D E A R A L Y R I Q R A A Q D A S V G L T H F E I D L F G R V R S L S H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T B
T S G G G G
T T T T
T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A A Q E Q Y L A T E E A R R S V H I S L V A E V A N T Y L T L L A D R A L L A L A Q D T L R S Q Q D A A D M I H R G K Q A G A M A Q L D E H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S
T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence R A D T Q V Q T A R V A A E Q Y T R Q I A Q D E N A L A V L I G G P L P A G V S R A A P L G D R A L L A E F P A G L P S T L L E R R P D I M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
T
S T T
B
T T
B G G G G G G S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence A A E H R L I A A N A Q I G A A R A A F F P R I T L T G A L G V A S A S L A G L F S G G V A W L F V P Q L T L P I F N A G S N Q A N L D L A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T B
B
B
G G G
B
T T T S S S
S
S B S S S
T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence T V R R D I N V A G Y E H T I Q D A F R E V A D N L A A R A T Y E R E V K A Q E A M I R D L A E T K R L A D M R F R N G V D D Y F G V F D A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S T S S
T

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . .

Sequence Q R Q L F A A Q Q L L V T Y K L A G L T S R V T L Y K A L G G G W V E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	L	G	W	R	N	F	L	A	D	A	Q	L	Q	Q	L	V	A	L	A	L	A	N	N	R	D	L	R	V	A	T	L	D	I	D	E	A	R	A	L	Y	R	I	Q	R	A	A	Q	D	A	S	V	G	L	T	H	F	E	I	D	L	F	G	R	V	R	S	L	S	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	T	B																																		T	S	G	G	G	G			T	T	T	T														T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	A	Q	E	Q	Y	L	A	T	E	E	A	R	R	S	V	H	I	S	L	V	A	E	V	A	N	T	Y	L	T	L	L	A	D	R	A	L	L	A	L	A	Q	D	T	L	R	S	Q	Q	D	A	A	D	M	I	H	R	G	K	Q	A	G	A	M	A	Q	L	D	E	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T	S																																																	S				T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	R	A	D	T	Q	V	Q	T	A	R	V	A	A	E	Q	Y	T	R	Q	I	A	Q	D	E	N	A	L	A	V	L	I	G	G	P	L	P	A	G	V	S	R	A	A	P	L	G	D	R	A	L	L	A	E	F	P	A	G	L	P	S	T	L	L	E	R	R	P	D	I	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																T	S								T				S	T	T				B					T	T		B	G	G	G	G	G	G	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	A	A	E	H	R	L	I	A	A	N	A	Q	I	G	A	A	R	A	A	F	F	P	R	I	T	L	T	G	A	L	G	V	A	S	A	S	L	A	G	L	F	S	G	G	V	A	W	L	F	V	P	Q	L	T	L	P	I	F	N	A	G	S	N	Q	A	N	L	D	L	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T	B														B		B		G	G	G		B								T	T	T	S	S	S									S		S	B	S	S	S						T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	T	V	R	R	D	I	N	V	A	G	Y	E	H	T	I	Q	D	A	F	R	E	V	A	D	N	L	A	A	R	A	T	Y	E	R	E	V	K	A	Q	E	A	M	I	R	D	L	A	E	T	K	R	L	A	D	M	R	F	R	N	G	V	D	D	Y	F	G	V	F	D	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	S																																																							T	S	S		T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Sequence	Q	R	Q	L	F	A	A	Q	Q	L	L	V	T	Y	K	L	A	G	L	T	S	R	V	T	L	Y	K	A	L	G	G	G	W	V	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																													T	T	S	S