PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c6tngA_

Fold library id	PDB Header	Molecule	Title
c6tngA_	4.10	PDB header: dna binding protein	Chain: A: PDB Molecule: uncharacterized protein;

Links to external resources
Added to library: Sat Feb 22 08:30:14 2020

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G V F E E L L R T S G I I L K V G E G Q N E I A V D Q T A F Q K K L R V A L E K H P S Y P G V V N E F I S G L E S H I K D R S Q F K N C L L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S S
S
T T T S S S T T T S T S
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P C C E S L I K L L L G I K I L Q P A V V T L L L E K I P E F F F D V V G T F G T N F P R L I V N Q F K W L D G L L D S Q D L V K K L M Q M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
T T T T T T T T T
S
T T S
T T T T
S
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L S V S P V P I Q H D I I T S L P E I L E D S Q Q N E V A R E L S C L L K Q G R R L T V P I L D A L S R L D L D A E L L A K V R Q S A M T I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S
T T S S
S S
T S S
S S
S S T T T T S
S S T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence V P S V K L E D L P V V I K F I L H N V K A A D A V E V I S D L R K S L D L S S T S Q N C V K L L F D V I K L A V R F Q K D V S E A W I K A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G
S S
S
S G G G
T T T T S S S T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence I E N S T S V S D H K V L D L I V L L L I H S T N S K N R K Q T E K V L R S K I R L G C M P E Q L M Q N A F Q N H S M V I K D F F P S I L S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
S S S
S S S T T
T S
S
T T

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence L A Q T F L H S A H P A V V S F G S C M Y K Q A F A V F D S Y C Q Q E V V C A L V T H V C S G N E T E L D I S L D V L T D L V I L H P S L L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S S S S S S
S
T T
T T T T

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence L R Y A T F V K T I L D S M Q K L N P C Q I R K L F Y I L S T L A F S Q R Q E G S Y I Q D D M H M V I R K W L S S S V P N H K Q M G I I G A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T T T T
T T
S
S

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence V T M M G S V A L I E C D G Q L S T L L D L V G F C C E Q T P E V L A L Y Y D E L A N L I E K Q K G N L D L Q L L D K F G K S L V E D F P N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T T
T
S S S S
T T T S

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence D F V V D L S P T V D G S F L F P V K S L Y N L D E D E T Q G A I A I N L L P L V S Q K R V V S P I C L S P C F R L L R L Y T G E Q N N G S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
T T
S
S S
S T T
S
S
S
T
S
S S T T T T T T T S

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence L E E I D A L L G C P L Y L T D L E V E G K L D S L S K Q E R E F L C S L L F Y A L N W F R E V V N A F C Q Q Q D A E M K G K V L T R L Q N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T G G G T T
S G G G T T
S S T T S S

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence I T E L Q N V L G K C L A A T P G Y V P P P A T F D S E A P A Q L Q S Y R P Y F R E L D L E V F S V L H C G L L T L G P A E L C F L L D D M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S S
S
S
S S T T S S S S
S S T T
T T
S S

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence C W K L E H V L T F S H L C Q R S P K E V A V C V V K L L K P L C N H M E N M H N Y F Q T V I P N Q G V V D E S G L N I Q E Y Q L M S S C Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T
T T T T S
S G G G T T S T T

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence H Q L L L A F R L L F A W S G F S Q H E N S N L L R S A L Q V L A D R L K P G E T E F L P L E E L I S E S F Q Y L L N F Q A S I P S F Q C A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
G G G S S T T
S S
S S
S T T T

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence F I L T Q V L M A I S E K P M T G W K R E K M A S L A K Q F L C Q S W M K P G G D R E K G S H F N S A L H T L L C V Y L E H T D N I L K A I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
S T T T S
S S S T T T T T T S
T T

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . . .

Sequence E E I S S V G V P E L I N S A K D G C S S T Y P T L S R Q T F P V F F R V M M A Q L E S S V K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S S
S B T T T T
B S S
T T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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Phyre2 is part of Genome3D

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	V	F	E	E	L	L	R	T	S	G	I	I	L	K	V	G	E	G	Q	N	E	I	A	V	D	Q	T	A	F	Q	K	K	L	R	V	A	L	E	K	H	P	S	Y	P	G	V	V	N	E	F	I	S	G	L	E	S	H	I	K	D	R	S	Q	F	K	N	C	L	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S						S	S	S						S													T	T	T	S	S	S	T	T	T	S											T	S		S									S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	C	C	E	S	L	I	K	L	L	L	G	I	K	I	L	Q	P	A	V	V	T	L	L	L	E	K	I	P	E	F	F	F	D	V	V	G	T	F	G	T	N	F	P	R	L	I	V	N	Q	F	K	W	L	D	G	L	L	D	S	Q	D	L	V	K	K	L	M	Q	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T			T	T	T	T	T	T							T					T	T		S				T	T	S										T	T	T	T					S		S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	S	V	S	P	V	P	I	Q	H	D	I	I	T	S	L	P	E	I	L	E	D	S	Q	Q	N	E	V	A	R	E	L	S	C	L	L	K	Q	G	R	R	L	T	V	P	I	L	D	A	L	S	R	L	D	L	D	A	E	L	L	A	K	V	R	Q	S	A	M	T	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	S	S										T	T	S					S		S	S													T	S	S		S	S		S	S					T	T	T	T	S				S	S											T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	V	P	S	V	K	L	E	D	L	P	V	V	I	K	F	I	L	H	N	V	K	A	A	D	A	V	E	V	I	S	D	L	R	K	S	L	D	L	S	S	T	S	Q	N	C	V	K	L	L	F	D	V	I	K	L	A	V	R	F	Q	K	D	V	S	E	A	W	I	K	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G			S	S												S			S	G	G	G																															T	T	T	T	S	S	S								T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	I	E	N	S	T	S	V	S	D	H	K	V	L	D	L	I	V	L	L	L	I	H	S	T	N	S	K	N	R	K	Q	T	E	K	V	L	R	S	K	I	R	L	G	C	M	P	E	Q	L	M	Q	N	A	F	Q	N	H	S	M	V	I	K	D	F	F	P	S	I	L	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	S			S	S	S				S												S	S	T	T															T	S		S																		T	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	L	A	Q	T	F	L	H	S	A	H	P	A	V	V	S	F	G	S	C	M	Y	K	Q	A	F	A	V	F	D	S	Y	C	Q	Q	E	V	V	C	A	L	V	T	H	V	C	S	G	N	E	T	E	L	D	I	S	L	D	V	L	T	D	L	V	I	L	H	P	S	L	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	S	S	S	S	S	S																	S																			S																		T	T		T	T	T	T
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	L	R	Y	A	T	F	V	K	T	I	L	D	S	M	Q	K	L	N	P	C	Q	I	R	K	L	F	Y	I	L	S	T	L	A	F	S	Q	R	Q	E	G	S	Y	I	Q	D	D	M	H	M	V	I	R	K	W	L	S	S	S	V	P	N	H	K	Q	M	G	I	I	G	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T						T	T	T	T	T																					T	T		S																						S
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	V	T	M	M	G	S	V	A	L	I	E	C	D	G	Q	L	S	T	L	L	D	L	V	G	F	C	C	E	Q	T	P	E	V	L	A	L	Y	Y	D	E	L	A	N	L	I	E	K	Q	K	G	N	L	D	L	Q	L	L	D	K	F	G	K	S	L	V	E	D	F	P	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T			T																	T	T																		T		S	S	S	S											T	T	T	S
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	D	F	V	V	D	L	S	P	T	V	D	G	S	F	L	F	P	V	K	S	L	Y	N	L	D	E	D	E	T	Q	G	A	I	A	I	N	L	L	P	L	V	S	Q	K	R	V	V	S	P	I	C	L	S	P	C	F	R	L	L	R	L	Y	T	G	E	Q	N	N	G	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S					T	T				S		S	S				S	T	T					S		S			S									T					S			S	S	T	T	T												T	T	T	T	S
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	L	E	E	I	D	A	L	L	G	C	P	L	Y	L	T	D	L	E	V	E	G	K	L	D	S	L	S	K	Q	E	R	E	F	L	C	S	L	L	F	Y	A	L	N	W	F	R	E	V	V	N	A	F	C	Q	Q	Q	D	A	E	M	K	G	K	V	L	T	R	L	Q	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	T	T	G	G	G	T	T											S	G	G	G	T	T			S	S																						T	T	S	S
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	I	T	E	L	Q	N	V	L	G	K	C	L	A	A	T	P	G	Y	V	P	P	P	A	T	F	D	S	E	A	P	A	Q	L	Q	S	Y	R	P	Y	F	R	E	L	D	L	E	V	F	S	V	L	H	C	G	L	L	T	L	G	P	A	E	L	C	F	L	L	D	D	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	S	S	S						S				S						S	S	T	T	S	S	S	S					S	S	T	T			T	T								S	S
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	C	W	K	L	E	H	V	L	T	F	S	H	L	C	Q	R	S	P	K	E	V	A	V	C	V	V	K	L	L	K	P	L	C	N	H	M	E	N	M	H	N	Y	F	Q	T	V	I	P	N	Q	G	V	V	D	E	S	G	L	N	I	Q	E	Y	Q	L	M	S	S	C	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	T	T				T	T	T	T	S													S																						G	G	G	T	T								S	T	T
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	H	Q	L	L	L	A	F	R	L	L	F	A	W	S	G	F	S	Q	H	E	N	S	N	L	L	R	S	A	L	Q	V	L	A	D	R	L	K	P	G	E	T	E	F	L	P	L	E	E	L	I	S	E	S	F	Q	Y	L	L	N	F	Q	A	S	I	P	S	F	Q	C	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S		G	G	G	S	S	T	T															S	S				S	S				S	T															T	T
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	F	I	L	T	Q	V	L	M	A	I	S	E	K	P	M	T	G	W	K	R	E	K	M	A	S	L	A	K	Q	F	L	C	Q	S	W	M	K	P	G	G	D	R	E	K	G	S	H	F	N	S	A	L	H	T	L	L	C	V	Y	L	E	H	T	D	N	I	L	K	A	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T	S			S	T	T	T														S								S	S	S	T	T	T	T	T	T														S				T	T
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.
Sequence	E	E	I	S	S	V	G	V	P	E	L	I	N	S	A	K	D	G	C	S	S	T	Y	P	T	L	S	R	Q	T	F	P	V	F	F	R	V	M	M	A	Q	L	E	S	S	V	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	S	S	S		S	B	T	T	T	T		B	S	S			T	T															T	T