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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c6t9kD_

Fold library idPDB HeaderMoleculeTitle
c6t9kD_3.30PDB header: gene regulationChain: D: PDB Molecule: transcription initiation factor tfiid subunit 5;


Added to library: Sat Feb 1 10:29:51 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SASDLNRIVLEYLNKKGYHRTEAMLRAESGRTLTPQNKQSPANTKTGKFPEQSSIPPNPGKTAKPISNPT
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Known secondary structure (DSSP)
TT

S




SSTT

TTT






S





S


SSSS

 .........80.........90.........100.........110.........120.........130.........140
Sequence PENYIRAYSMLKNWVDSSLEIYKPELSYIMYPIFIYLFLNLVAKNPVYARRFFDRFSPDFKDFHGSEINR
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T

STTTTT
S
TTSTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence LFSVNSIDHIKENEVASAFQSHKYRITMSKTTLNLLLYFLNENESIGGSLIISVINQHLDPNIDLKLEIQ
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Known secondary structure (DSSP) TTS

STTSS


TT
TTTT


 .........220.........230.........240.........250.........260.........270.........280
Sequence KVKESRDAIKLDNLQLALPSVCMYTFQNTNKDMSCLDFSDDCRIAAAGFQDSYIKIWSLDGSSLNNPNIA
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Known secondary structure (DSSP) SS


S






S

S

SSS
TTS
TT



S

TTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence LNNNDKDEDPTCKTLVGHSGTVYSTSFSPDNKYLLSGSEDKTVRLWSMDTHTALVSYKGHNHPVWDVSFS
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Known secondary structure (DSSP)

S

SS


S


SS

TTSSSSS
TTTT


SS


 .........360.........370.........380.........390.........400.........410.........420
Sequence PLGHYFATASHDQTARLWSCDHIYPLRIFAGHLNDVDCVSFHPNGCYVFTGSSDKTCRMWDVSTGDSVRL
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Known secondary structure (DSSP) SSSS

TTSTT

SS

TTSSTTTTTT

 .........430.........440.........450.........460.........470.........480.........490
Sequence FLGHTAPVISIAVCPDGRWLSTGSEDGIINVWDIGTGKRLKQMRGHGKNAIYSLSYSKEGNVLISGGADH
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Known secondary structure (DSSP)

SS

SSSSTTS
TTT
S

S
SS





SSS

SSS
 .........500.........510.........520.........530.........540.........550.........560
Sequence TVRVWDLKKATTEPSAEPDEGDVTASINQDIKEYGRRRTVIPTSDLVASFYTKKTPVFKVKFSRSNLALA
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Known secondary structure (DSSP) SSSSSS









SSTTTSTT

TT
STTS



TT
SS




TTS
 ......
Sequence GGAFRP
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Known secondary structure (DSSP)



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol

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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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