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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c6s2cA_

Fold library idPDB HeaderMoleculeTitle
c6s2cA_3.20PDB header: virusChain: A: PDB Molecule: capsid protein;


Added to library: Sat May 2 08:21:19 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PISADFSEVENAPSFLSLAENTDEVLKPYTGLEIQTIITNIVGDANPNQSRIFDQDRLRGNQYSAGGLVT
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Known secondary structure (DSSP)


SSTTS

SSTTSS









S


SS




STTTTTS
SSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence QNAVSAIPFTNLIPRTIRVGNILVNSANRLQITETNVSEYYSNPIIATKLSEMISDQVKNNQFSTWRRDN
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Known secondary structure (DSSP)



BSSTT

S

B



SS

B

TTTTTTTS





SS

 .........150.........160.........170.........180.........190.........200.........210
Sequence TSLQGFNAFDIATINTAILPNGLSLESMLLKLSLLHSIKAMNVDAASINRSQYQVIDHNTVPTIGAPAVV
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Known secondary structure (DSSP)
SSS
S
SGGGTTTTT







SSSTTSSS
GGGS
SSTTSSS

S

SSS

 .........220.........230.........240.........250.........260.........270.........280
Sequence GVNNSPVFGEDCGGNNPVYPFGGGTGAIAFHVTLQTVPDERKSYAIFVPPAILQATSDANEALALFALSM
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Known secondary structure (DSSP) S


SSS

TTSSS


TTSS



SSGGGS
SS
GGG


TTSSSSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence SEWPHALYTVTKQTTDLAGANAGQQVFIPTQSTIHIGGRRVLDLIIPRREIAAMCMVRPQAGPDATAGAI
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Known secondary structure (DSSP) S
S
SS

SSS


GGGS







SS




SSGGGS
S




SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence PLAAGQLFNMNFIGAPAFEEWPLTSYLYSWAGRFDITTIRQYMGRLATMVGVKDAYWAAHELNVALSQVA
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Known secondary structure (DSSP)




SS



SS


SS

B
TSS


S


B
 .........430.........440.........450.........460.........470.........480.........490
Sequence PKMTTAAGGWAAQAANSAQQSDVCYSSLLTVTRSAANFPLANQPAADMRVYDTDPATWNKVALGLATAAN
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Known secondary structure (DSSP)


SSS




SS
TTTS

TTSBB

B

S
SS
SS







TTTS
B
TT
 .........500.........510.........520.........530.........540.........550.........560
Sequence LVPEQSMDVPFVVGDARTSFWERLQAIPMCIAWTMYYHSRGITTLAWDNAYTDNTNKWLQKMVRNTFSTT
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Known secondary structure (DSSP)




GGGS
TTTT
TTTTT

S


TTTT

 .........570.........580.........590.........600.........610.........620.........630
Sequence QSVGTIIPARYGKIVCNLYKNMFHRAPAYVATSVGGKELHITHFERWLPGGTYANVYSGAGAVVNCFSPV
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Known secondary structure (DSSP) BSSSSB


TTSS




SSS

GGG
B
S
S
B


B
SSS
B
TTSS

 .........640.........650.........660.........670.........680.........690.........700
Sequence LIPDIWCQYFTAKLPLFAGAFPPAQGQNSTKGFNSKQGLMIHRNQNNNLVAPYLEKFADNSSYFPVGQGP
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Known secondary structure (DSSP)
S
S
SS

SSS




SSSTT
S



GGGT


BGGGTBB




SS
SSB

TT


 .........710.........720.........730.........740.........750.........760.........770
Sequence EINDMATWNGRLWMTTGNVQYLDYSGAAIVEAVPPAGELPVGKQIPLLAGENAPIELTNAATTCVPRYSN
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Known secondary structure (DSSP)


TSS

B


SSS


SS


SSS








TT
B


SSSSB






B
T
 .........780.........790.........800.........810.........820.........830
Sequence DGRRIFTYLTTAQSVIPVQACNRAANLARSCWLLSNVYAEPALQALGDEVEDAFDTLTNS
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Known secondary structure (DSSP) TSBB


BB
SGGGTTS






SS




SS




S


SSSTTS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol

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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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