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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c6rbkC_

Fold library idPDB HeaderMoleculeTitle
c6rbkC_3.40PDB header: virus like particleChain: C: PDB Molecule: afp8;


Added to library: Sat Apr 27 08:34:07 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence HITLDIAGQRSTLGIRRLRVQQLINEIPLAQLELHIPTDNHGAADNAVQHEVSRFTLGVRVGIAQDNKPL
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Known secondary structure (DSSP)
TTB





SSS




SS
STTTT

SS
TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence FDGYLVQKKMQLKGKEWSVRLEARHALQKLTFLPHSRVFRQQDDSTVMKGLLQSAGVKLTQSKHDQLLQF
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Known secondary structure (DSSP)




TT


GGGGGSS

B




S

TTTGGGTT




S




 .........150.........160.........170.........180.........190.........200.........210
Sequence RLSDWQFIRSRLLSTNCWLLPDAASDTVVIRPLSSRTLARDSHDYTLYEINLNFDNRFTPDSLSLQGWDI
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Known secondary structure (DSSP) SB
SSTTTTTTSTTTT

B
SSSS





B
SS
SSS




TT

S



T
 .........220.........230.........240.........250.........260.........270.........280
Sequence AAQRLTAAQKSPAGAFRPWKPAGQDYALAFSMLPEATLQTLSNSWLNYQQMTGVQGHIVLAGTRDFAPGE
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Known secondary structure (DSSP) TT
S



B


TTSS
S




SS
SSSSSTTTS

S
S


TT
 .........290.........300.........310.........320.........330.........340.........350
Sequence SITLSGFGAGLDGTAMLSGVNQQFDTQYGWRSELVIGLPASMLEPAPPVRSLHIGTVAGFTADPQHLDRI
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Known secondary structure (DSSP)

SS
SSS



SSS
B

S






SS



S

B
S



TTSS

 .........360.........370.........380.........390.........400.........410.........420
Sequence AIHLPALNLPDSLIFARLSKPWASHASGFCFYPEPGDEVVVGFIDSDPRYPMILGALHNPKNTAPFPPDE
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Known secondary structure (DSSP)

TTTT
SS



SS

SS







TT

GGG
TTS



TTT

SS


S
 .........430.........440.........450.........460.........470.........480.........490
Sequence KNNRKGLIVSQADQTQALMIDTEEKTLRLMAGDNTLTLTGEGNLTMSTPNALQLQADTLGLQADSNLSIA
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Known secondary structure (DSSP) S

B




BSSS
B
S
BTTTT


SSS





TTS





SS





SS




SS




 .........500....
Sequence GKQQVEITSAKINM
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Known secondary structure (DSSP)
SS





SS



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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