PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c6r5kA_

Fold library id	PDB Header	Molecule	Title
c6r5kA_	4.80	PDB header: rna binding protein	Chain: A: PDB Molecule: pan2-pan3 deadenylation complex catalytic subunit pan2;

Links to external resources
Added to library: Sat Jun 1 09:06:46 2019

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E I T A I S F D E K A N L I W S G D S Y G C I S S Y D P T F Q L Y T R Y R G H I G G N S V K D I L S H R D G I L S I S E D S L H F A N R R G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S
S S S
S S S
S S S
S
S S
S S
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V T K L N L T S I D I A A F S E L N T M C Y S P H S L K N N I Y C G G D N T N W G I A S I D L N R G C L D S L L N Y S S K V K L M C S N N K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S S S S S S
B
T T
S S S
B
B
S S S S S S
T T T S S
S
S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V L S I G R Q T G T V D L L D P T S N R T I K S F N A H S A S I S A M D L R D N T L V T V G K S K R F Y N L Y A D P F V N V Y D L R T M R Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
T T T
S S
T T
B
S S
B
S S S S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence L P P V S F S K G T T M G S G G A D F V Q L H P L L P T V M I V A S S S G S F D F I D L S N P T L R T Q Y V H P C Q S I K K L C L S P N G D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S S
S S S S S
S S
S S
T T
S
S
T T S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence V L G I L E A D N H L D T W R R S S N N M G M F T N T P E M L A Y P D Y F N D I T S D G P I S V D D E T Y P L S S V G M P Y Y L D K L L S A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
S
S S
T T
S
S
S
T T T
S S S
S S
S
T T

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence W P P V V F K S E G T I P Q L L A V I S S Q N E K L S T Q E F P L L R Y D R T K Y G M R N A I P D Y V C L R D I R K Q I T S G L E T S D I Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S
T T T G G G
S S
S T T
T S
S
S S

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence T Y T S I N K Y E V P P A Y S R L P L T S G R F G T D N F D F T P F N N T E Y S G L D P D V D N H Y T N A I I Q L Y R F I P E M F N F V V G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S S S
G G G S
S B T T B
T T T
S S
B
S T T S S T T

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence C L K D E N F E T T L L T D L G Y L F D M M E R S H G K I C S S S N F Q A S L K S L T D K R Q E E Y L E S L C I R E S I E D F N S S E S I K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
T T
S S
B
S
T T T T T T
S S
S
S S

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence R N M P Q K F N R F L L S Q L I K E E A Q T V N H N I T L N Q C F G L E T E I R T E C S C D H Y D T T V K L L P S L S I S G I N K T G Q N I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S T S S S
S S S S
S T T
S S

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence L P Y I E Y A M K N V T Q K N S I C P T C G K T E T I T Q E C T V K N L P S V L S L E L S L L D T E F S N I R S S K N W L T S E F Y G S I I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T T
S
S
S T T
S
S

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence K N K A V L R S T A S E L K G T S H I F K Y E L N G Y V A K I T D N N N E T R L V T Y V K K Y N P K E N C F K W L M F N D Y L V V E I T E E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S T T T
S S
T T
T T T T
S S

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence E A L K M T Y P W K T P E I I I Y C D A E E L R K P F F S V D T Y S I N Y D I L F R D Y F A N G I R D T A R R E Y K L L T H D E A P K S G T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T
S T T S
T T T T S
S
S
S S
G G G
S S

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence L V A I D A E F V S L Q S E L C E I D H I R P K R T A L A R I S I I R G E E G E L Y G V P F V D D Y V V N T N H I E D Y L T R Y S G I L P G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S T T T T
S
S
T T T T

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence D L D P E K S T K R L V R R N V V Y R K V W L L M Q L G C V F V G H G L N N D F K H I N I N V P R N Q I R D T A I Y F L Q G K R Y L S L R Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
S S
T T T T T B S S T
B T
B T T B

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . . . . . 1030 . . . . . . . . . 1040

Sequence L A Y V L L G M N I Q E G N H D S I E D A H T A L I L Y K K Y L H L K E K A I F E K V L N S V Y E E G R A H N F K V P E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T T T S
T T
T T
T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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Phyre2 is part of Genome3D

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	I	T	A	I	S	F	D	E	K	A	N	L	I	W	S	G	D	S	Y	G	C	I	S	S	Y	D	P	T	F	Q	L	Y	T	R	Y	R	G	H	I	G	G	N	S	V	K	D	I	L	S	H	R	D	G	I	L	S	I	S	E	D	S	L	H	F	A	N	R	R	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T	S	S							S	S	S							S	S	S											S	S	S			S						S	S							S	S							T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	T	K	L	N	L	T	S	I	D	I	A	A	F	S	E	L	N	T	M	C	Y	S	P	H	S	L	K	N	N	I	Y	C	G	G	D	N	T	N	W	G	I	A	S	I	D	L	N	R	G	C	L	D	S	L	L	N	Y	S	S	K	V	K	L	M	C	S	N	N	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S		S	S	S	S	S	S	S			B					T	T		S	S	S		B			B		S	S	S	S	S	S						T	T	T	S	S									S								S	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	L	S	I	G	R	Q	T	G	T	V	D	L	L	D	P	T	S	N	R	T	I	K	S	F	N	A	H	S	A	S	I	S	A	M	D	L	R	D	N	T	L	V	T	V	G	K	S	K	R	F	Y	N	L	Y	A	D	P	F	V	N	V	Y	D	L	R	T	M	R	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T	S							T	T	T											S	S									T	T							B				S	S				B		S							S	S	S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	L	P	P	V	S	F	S	K	G	T	T	M	G	S	G	G	A	D	F	V	Q	L	H	P	L	L	P	T	V	M	I	V	A	S	S	S	G	S	F	D	F	I	D	L	S	N	P	T	L	R	T	Q	Y	V	H	P	C	Q	S	I	K	K	L	C	L	S	P	N	G	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T	S	S	S											S	S	S	S	S							S	S								S	S		T	T									S				S						T	T	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	V	L	G	I	L	E	A	D	N	H	L	D	T	W	R	R	S	S	N	N	M	G	M	F	T	N	T	P	E	M	L	A	Y	P	D	Y	F	N	D	I	T	S	D	G	P	I	S	V	D	D	E	T	Y	P	L	S	S	V	G	M	P	Y	Y	L	D	K	L	L	S	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T							S					S			S	S					T	T		S			S					S							T	T	T		S	S	S		S	S									S			T	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	W	P	P	V	V	F	K	S	E	G	T	I	P	Q	L	L	A	V	I	S	S	Q	N	E	K	L	S	T	Q	E	F	P	L	L	R	Y	D	R	T	K	Y	G	M	R	N	A	I	P	D	Y	V	C	L	R	D	I	R	K	Q	I	T	S	G	L	E	T	S	D	I	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S		S										T	T	T	G	G	G		S	S														S	T	T								T								S		S			S	S
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	T	Y	T	S	I	N	K	Y	E	V	P	P	A	Y	S	R	L	P	L	T	S	G	R	F	G	T	D	N	F	D	F	T	P	F	N	N	T	E	Y	S	G	L	D	P	D	V	D	N	H	Y	T	N	A	I	I	Q	L	Y	R	F	I	P	E	M	F	N	F	V	V	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S	S	S	S			G	G	G	S								S	B	T	T	B					T	T	T			S	S			B					S	T	T	S	S									T	T
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	C	L	K	D	E	N	F	E	T	T	L	L	T	D	L	G	Y	L	F	D	M	M	E	R	S	H	G	K	I	C	S	S	S	N	F	Q	A	S	L	K	S	L	T	D	K	R	Q	E	E	Y	L	E	S	L	C	I	R	E	S	I	E	D	F	N	S	S	E	S	I	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T	S			T	T																		S	S		B																S										T	T	T	T	T	T		S	S			S		S	S
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	R	N	M	P	Q	K	F	N	R	F	L	L	S	Q	L	I	K	E	E	A	Q	T	V	N	H	N	I	T	L	N	Q	C	F	G	L	E	T	E	I	R	T	E	C	S	C	D	H	Y	D	T	T	V	K	L	L	P	S	L	S	I	S	G	I	N	K	T	G	Q	N	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S																			T	S	S	S																				S	S	S	S																S	T	T				S	S
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	L	P	Y	I	E	Y	A	M	K	N	V	T	Q	K	N	S	I	C	P	T	C	G	K	T	E	T	I	T	Q	E	C	T	V	K	N	L	P	S	V	L	S	L	E	L	S	L	L	D	T	E	F	S	N	I	R	S	S	K	N	W	L	T	S	E	F	Y	G	S	I	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S										T	T	T		S															S																			S	T	T		S		S
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	K	N	K	A	V	L	R	S	T	A	S	E	L	K	G	T	S	H	I	F	K	Y	E	L	N	G	Y	V	A	K	I	T	D	N	N	N	E	T	R	L	V	T	Y	V	K	K	Y	N	P	K	E	N	C	F	K	W	L	M	F	N	D	Y	L	V	V	E	I	T	E	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T						S	S	T	T	T				S	S																	T	T														T	T	T	T									S	S
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	E	A	L	K	M	T	Y	P	W	K	T	P	E	I	I	I	Y	C	D	A	E	E	L	R	K	P	F	F	S	V	D	T	Y	S	I	N	Y	D	I	L	F	R	D	Y	F	A	N	G	I	R	D	T	A	R	R	E	Y	K	L	L	T	H	D	E	A	P	K	S	G	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T															T						S	T	T	S					T	T	T	T	S				S						S		S	S							G	G	G				S	S
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	L	V	A	I	D	A	E	F	V	S	L	Q	S	E	L	C	E	I	D	H	I	R	P	K	R	T	A	L	A	R	I	S	I	I	R	G	E	E	G	E	L	Y	G	V	P	F	V	D	D	Y	V	V	N	T	N	H	I	E	D	Y	L	T	R	Y	S	G	I	L	P	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																					S	S	S	T	T	T	T												S			S				T	T	T	T
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	D	L	D	P	E	K	S	T	K	R	L	V	R	R	N	V	V	Y	R	K	V	W	L	L	M	Q	L	G	C	V	F	V	G	H	G	L	N	N	D	F	K	H	I	N	I	N	V	P	R	N	Q	I	R	D	T	A	I	Y	F	L	Q	G	K	R	Y	L	S	L	R	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S	S		S	S					T	T	T	T												T					B	S	S									T										B					T		B	T	T	B
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040
Sequence	L	A	Y	V	L	L	G	M	N	I	Q	E	G	N	H	D	S	I	E	D	A	H	T	A	L	I	L	Y	K	K	Y	L	H	L	K	E	K	A	I	F	E	K	V	L	N	S	V	Y	E	E	G	R	A	H	N	F	K	V	P	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S		T	T	T	T	S		T	T																						T	T																T	T	T