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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c6qnwD_

Fold library idPDB HeaderMoleculeTitle
c6qnwD_3.31PDB header: rna binding proteinChain: D: PDB Molecule: polymerase acidic protein;


Added to library: Sat Sep 7 08:18:35 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MEDFVRQCFNPMIVELAEKAMKEYGEDLKIETNKFAAICTHLEVCFMYSDFHFINEQGESIVVELKHRFE
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Known secondary structure (DSSP)
S
TTTT

TTT
TT
SSS





S
 .........80.........90.........100.........110.........120.........130.........140
Sequence IIEGRDRTMAWTVVNSICNTTGAEKPKFLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSENTHIHI
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Known secondary structure (DSSP)
TTS
T



SS

SSSS

SS
S
SSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence FSFTGEEMATKADYTLDEESRARIKTRLFTIRQEMANRGLWDSFRQSERGEETIEERFEITGTMRRLADQ
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Known secondary structure (DSSP) SSS
GGG


S
STT

GGGTTSTTSSTT







TTTTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence SLPPNFSCLENFRAYVDGFEPNGYIEGKLSQMSKEVNAKIEPFLKTTPRPIRLPDGPPCFQRSKFLLMDA
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Known secondary structure (DSSP) TS
TT
SSS


S
S
TTSS




TTS







SSB




SS
SSSB
 .........290.........300.........310.........320.........330.........340.........350
Sequence LKLSIEDPSHEGEGIPLYDAIKCMRTFFGWKEPYIVKPHEKGINPNYLLSWKQVLAELQDIENEEKIPRT
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Known secondary structure (DSSP)



B



TTSS

TT






SSS
STSTTSSS

SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence KNMKKTSQLKWALGENPEKVDFDNCRDVSDLKDEPELRSLSSWIQNEFNKACELTDSTWIELDEIGEDVA
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Known secondary structure (DSSP)



TT






TTT
TT
TT







B

STSB
SS











S
 .........430.........440.........450.........460.........470.........480.........490
Sequence PIEYIASMRRNYFTAEVSHCRATEYIMKGVYINTALLNASCAAMDDFQLIPMISKCRTKEGRRKTNLYGF
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Known secondary structure (DSSP) TB
SSS
TTS
 .........500.........510.........520.........530.........540.........550.........560
Sequence IIKGRSHLRNDTDVVNFVSMEFSLTDPRLEPHKWEKYCVLEIGDMLLRGQMSRPMFLYVRTNGTSKIKMK
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Known secondary structure (DSSP)





SSS



TTTSGGG
SS








 .........570.........580.........590.........600.........610.........620.........630
Sequence WGMEMRRCLLQSLQQIESMIEAESSVKEKDMTKEFFENKSETWSIGKVCRTLLAKSVFNSLYASPQLEGF
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Known secondary structure (DSSP) STTTTT
SSSS


TTTSS
TT



T

 .........640.........650.........660.........670.........680......
Sequence SAESRKLLLVVQALRDNLEPGTFDLEGLYEAIEECLINDPWVLLNASWFNSFLTHA
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Known secondary structure (DSSP) TT


S
T
SS
T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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