PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c6qm8a_

Fold library id	PDB Header	Molecule	Title
c6qm8a_	3.30	PDB header: hydrolase	Chain: A: PDB Molecule: proteasome alpha1 chain;

Links to external resources
Added to library: Sat Apr 20 08:25:38 2019

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence W S P Y Q D N G G T T A A I A G K D F V I L A G D T R L N G D F C L H S R H D Q S K I F Q L T P Y T Y M A S N G M Q A D R L Q L Q Q M L K Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S
B
S S S
S B S
T T S
B S S S S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R V K W Y K Y N N G G K V P S T K A I A Q L M S T M L Y H R R F F P Y Y T F N M V V G L D E E G H G V C Y S Y D A V G S T E P F L Y G T R G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
T T T S
T T S
T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence S A A S F V E P L L D C L I N R Q H M T S Q A P P E M T K E E T L A M L K N A F T G A A E R D I Y T G D S V S F F I I T K D G V Q Q E S F E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
S
S
T T
S S
S B T T B

. . . .

Sequence L R K D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group,
Imperial College,
London
Michael Sternberg
Disclaimer

Terms and Conditions

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	W	S	P	Y	Q	D	N	G	G	T	T	A	A	I	A	G	K	D	F	V	I	L	A	G	D	T	R	L	N	G	D	F	C	L	H	S	R	H	D	Q	S	K	I	F	Q	L	T	P	Y	T	Y	M	A	S	N	G	M	Q	A	D	R	L	Q	L	Q	Q	M	L	K	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S														S	S										B			S	S	S		S	B	S				T	T	S		B	S	S	S	S							S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	V	K	W	Y	K	Y	N	N	G	G	K	V	P	S	T	K	A	I	A	Q	L	M	S	T	M	L	Y	H	R	R	F	F	P	Y	Y	T	F	N	M	V	V	G	L	D	E	E	G	H	G	V	C	Y	S	Y	D	A	V	G	S	T	E	P	F	L	Y	G	T	R	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T	T																			T	T	T	S													T	T	S									T	T							S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	S	A	A	S	F	V	E	P	L	L	D	C	L	I	N	R	Q	H	M	T	S	Q	A	P	P	E	M	T	K	E	E	T	L	A	M	L	K	N	A	F	T	G	A	A	E	R	D	I	Y	T	G	D	S	V	S	F	F	I	I	T	K	D	G	V	Q	Q	E	S	F	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T															T	T			S				S																				T	T		S	S			S								B	T	T	B
	.	.	.	.
Sequence	L	R	K	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)