PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c6qm8Y_

Fold library id	PDB Header	Molecule	Title
c6qm8Y_	3.30	PDB header: hydrolase	Chain: Y: PDB Molecule: proteasome beta4 chain;

Links to external resources
Added to library: Sat Apr 20 08:24:22 2019

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M A E T A I A F R C K D Y V M V A A A G L N A F Y Y I K I T D A E D K I T Q L D T H Q L V A C T G E N G P R V N F T E Y I K C N L A L N R M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S
T T S
S S S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R Q H G R H S S C E S T A N F M R N C L A S A I R S R E G A Y Q V N C L F A G Y D T P V S E D D D G V V G P Q L F Y M D Y L G T L Q A V P Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
T T S S S
S S S
S
S S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . .

Sequence G C H G Y G A C F V T A L L D R L W R P D L S Q Q E G L E L M Q K C C D E V K R R V I I S N S Y F F V K A V T K N G V E V I T A V H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T
T T
S S
S S
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	A	E	T	A	I	A	F	R	C	K	D	Y	V	M	V	A	A	A	G	L	N	A	F	Y	Y	I	K	I	T	D	A	E	D	K	I	T	Q	L	D	T	H	Q	L	V	A	C	T	G	E	N	G	P	R	V	N	F	T	E	Y	I	K	C	N	L	A	L	N	R	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S								S	S													T	T					S								S	S	S	S							S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	Q	H	G	R	H	S	S	C	E	S	T	A	N	F	M	R	N	C	L	A	S	A	I	R	S	R	E	G	A	Y	Q	V	N	C	L	F	A	G	Y	D	T	P	V	S	E	D	D	D	G	V	V	G	P	Q	L	F	Y	M	D	Y	L	G	T	L	Q	A	V	P	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T	T																				T	T	S	S	S																	S	S	S			S											S	S							S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Sequence	G	C	H	G	Y	G	A	C	F	V	T	A	L	L	D	R	L	W	R	P	D	L	S	Q	Q	E	G	L	E	L	M	Q	K	C	C	D	E	V	K	R	R	V	I	I	S	N	S	Y	F	F	V	K	A	V	T	K	N	G	V	E	V	I	T	A	V	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	T	T														T	T																						S	S												S	S							S