PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c6qldY_

Fold library id	PDB Header	Molecule	Title
c6qldY_	4.15	PDB header: dna binding protein	Chain: Y: PDB Molecule: inner kinetochore subunit nkp1;

Links to external resources
Added to library: Sat Oct 5 08:30:46 2019

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T D T Y N S I S N F I E N E L T A L L S S D D Y L M D D L A G P N E V C R L L K A Q V I E K R K D A M S R G K Q D L L S K E I Y D N E S E L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T T T S
S
T T T T T S S T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R A S Q S Q Q I M E L V G D I P K Y S L G S E L R N R V E G E P Q S T S I E R L I E D V L K L P Q M D L K V L S E Y S N L R K D L I L K C Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
S S
S S S S
S
T S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A L Q I G E S K L S D I L S Q T N S I N S L T T S I K E A S E D D D I S E Y F A T Y N G K L V V A L E E M K L L L E E A V K T F G N S P E K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T
S S

. . . . . . . . . 220 . . .

Sequence R E K I K K I L S E L K K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	D	T	Y	N	S	I	S	N	F	I	E	N	E	L	T	A	L	L	S	S	D	D	Y	L	M	D	D	L	A	G	P	N	E	V	C	R	L	L	K	A	Q	V	I	E	K	R	K	D	A	M	S	R	G	K	Q	D	L	L	S	K	E	I	Y	D	N	E	S	E	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T						T	T	T	T	T	S			S																	T	T	T	T	T	S	S	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	A	S	Q	S	Q	Q	I	M	E	L	V	G	D	I	P	K	Y	S	L	G	S	E	L	R	N	R	V	E	G	E	P	Q	S	T	S	I	E	R	L	I	E	D	V	L	K	L	P	Q	M	D	L	K	V	L	S	E	Y	S	N	L	R	K	D	L	I	L	K	C	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S	S			S	S		S	S	S	S										S															T	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	L	Q	I	G	E	S	K	L	S	D	I	L	S	Q	T	N	S	I	N	S	L	T	T	S	I	K	E	A	S	E	D	D	D	I	S	E	Y	F	A	T	Y	N	G	K	L	V	V	A	L	E	E	M	K	L	L	L	E	E	A	V	K	T	F	G	N	S	P	E	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																S	S								T																							T			S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.
Sequence	R	E	K	I	K	K	I	L	S	E	L	K	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)