PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c6q56C_

Fold library id	PDB Header	Molecule	Title
c6q56C_	2.00	PDB header: rna binding protein	Chain: C: PDB Molecule: trna (adenine(22)-n(1))-methyltransferase;

Links to external resources
Added to library: Sat Mar 30 08:28:09 2019

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E L K L S K R L Q T V A E Y I P N G A V M A D I G S D H A Y L P S Y A V L N H K A S G A I A G E I T D G P F L S A K R Q V E K S G L N S H I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
T T T
S T T T T S S S T
T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S V R Q G D G L E V I K K G E A D A I T I A G M G G A L I A H I L E A G K D K L T G K E R L I L Q P N I H A V H I R E W L Y K E R Y A L I D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S G G G G S
T T T
S T G G G
S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence E V I L E E D G K S Y E V L V A E A G D R D A A Y D G I S L S A G M L V G P F L A K E K N A V F L K K W T Q E L Q H T Q S I Y E Q I S Q A A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
T T G G G T T S
T S

. . . . . . . . . 220 . . . . . . . . . 230 . . . .

Sequence D T E Q N K Q K L K E L A D R M E L L K E V I D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	L	K	L	S	K	R	L	Q	T	V	A	E	Y	I	P	N	G	A	V	M	A	D	I	G	S	D	H	A	Y	L	P	S	Y	A	V	L	N	H	K	A	S	G	A	I	A	G	E	I	T	D	G	P	F	L	S	A	K	R	Q	V	E	K	S	G	L	N	S	H	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T	S		T	T							T		S	T	T									T	T	S									S	S															T		T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	V	R	Q	G	D	G	L	E	V	I	K	K	G	E	A	D	A	I	T	I	A	G	M	G	G	A	L	I	A	H	I	L	E	A	G	K	D	K	L	T	G	K	E	R	L	I	L	Q	P	N	I	H	A	V	H	I	R	E	W	L	Y	K	E	R	Y	A	L	I	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S	G	G	G	G	S		T	T	T		S																			T	G	G	G			S																						T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	E	V	I	L	E	E	D	G	K	S	Y	E	V	L	V	A	E	A	G	D	R	D	A	A	Y	D	G	I	S	L	S	A	G	M	L	V	G	P	F	L	A	K	E	K	N	A	V	F	L	K	K	W	T	Q	E	L	Q	H	T	Q	S	I	Y	E	Q	I	S	Q	A	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T											S		T	T	G	G	G	T	T	S																																								T	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Sequence	D	T	E	Q	N	K	Q	K	L	K	E	L	A	D	R	M	E	L	L	K	E	V	I	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)