PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c6q1hB_

Fold library id	PDB Header	Molecule	Title
c6q1hB_	1.45	PDB header: dna binding protein/rna	Chain: B: PDB Molecule: bacterial protein orf c62;

Links to external resources
Added to library: Sat Dec 28 08:35:57 2019

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S Q W S L S Q L L S S L H E D I Q Q R L S V V R K T F G H P G T K G D A S E N V W I D M L D T Y L P K R Y Q A A K A H V V D S L G N F S Q Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T
T T S
B

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I N V V V F D R Q Y S P F I F T Y E N E T I I P A E S V Y A V F E A K Q T A D A G L V A Y A Q E K V A S V R R L H R T S L P I P H A G G T Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S T T G G G
S
T S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence P A K P L I P I L G G L L T F E S E W S P A L G P S M D K A L N A N L T E G R L D I G C V A A H G H F F Y D Q A S G A Y S Y T N E N K P A T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S S S T T S T
S T T
T T T T T T T S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240

Sequence A F L F K L I A Q L Q F S G T V P M I D V E A Y G Q W L T K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
G G G

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	Q	W	S	L	S	Q	L	L	S	S	L	H	E	D	I	Q	Q	R	L	S	V	V	R	K	T	F	G	H	P	G	T	K	G	D	A	S	E	N	V	W	I	D	M	L	D	T	Y	L	P	K	R	Y	Q	A	A	K	A	H	V	V	D	S	L	G	N	F	S	Q	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																													S																				S		T	T											T	T	S		B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	N	V	V	V	F	D	R	Q	Y	S	P	F	I	F	T	Y	E	N	E	T	I	I	P	A	E	S	V	Y	A	V	F	E	A	K	Q	T	A	D	A	G	L	V	A	Y	A	Q	E	K	V	A	S	V	R	R	L	H	R	T	S	L	P	I	P	H	A	G	G	T	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S	S				S				T	T						G	G	G									S																			T	S										T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	P	A	K	P	L	I	P	I	L	G	G	L	L	T	F	E	S	E	W	S	P	A	L	G	P	S	M	D	K	A	L	N	A	N	L	T	E	G	R	L	D	I	G	C	V	A	A	H	G	H	F	F	Y	D	Q	A	S	G	A	Y	S	Y	T	N	E	N	K	P	A	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															S			S	S	S	S	T	T	S									T			S	T	T								T	T	T							T	T	T	T							S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence	A	F	L	F	K	L	I	A	Q	L	Q	F	S	G	T	V	P	M	I	D	V	E	A	Y	G	Q	W	L	T	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															S											G	G	G