PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c6p4eB_

Fold library id	PDB Header	Molecule	Title
c6p4eB_	1.35	PDB header: hydrolase/hydrolase inhibitor	Chain: B: PDB Molecule: cysteine proteinase b;

Links to external resources
Added to library: Sat Jun 6 08:32:50 2020

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A V P D A V D W R E K G A V T P V K D Q G A C G S C W A F S A V G N I E G Q W Y L A G H E L V S L S E Q Q L V S C D D M D N G C S G G L M L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T T T T
B
T T S B
T T S
B
S S S
T T B

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Q A F D W L L Q N T N G H L H T E D S Y P Y V S G N G Y V P E C S N S S E L V V G A Q I D G H V L I G S S E K A M A A W L A K N G P I A I A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T B T T T S
T T S
T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L D A S S F M S Y K S G V L T A C I G K Q L N H G V L L V G Y D M T G E V P Y W V I K N S W G G D W G E Q G Y V R V V M G V N A C L L S E Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G T T
S S
S
S
S S S S
S B
T T S T B T T S S S
G G G T T S

. . . . . . .

Sequence P V S A H V R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group,
Imperial College,
London
Michael Sternberg
Disclaimer

Terms and Conditions

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	V	P	D	A	V	D	W	R	E	K	G	A	V	T	P	V	K	D	Q	G	A	C	G	S	C	W	A	F	S	A	V	G	N	I	E	G	Q	W	Y	L	A	G	H	E	L	V	S	L	S	E	Q	Q	L	V	S	C	D	D	M	D	N	G	C	S	G	G	L	M	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S				T	T	T	T	T							B		T	T	S	B																		T	T	S					B										S	S	S		T	T	B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Q	A	F	D	W	L	L	Q	N	T	N	G	H	L	H	T	E	D	S	Y	P	Y	V	S	G	N	G	Y	V	P	E	C	S	N	S	S	E	L	V	V	G	A	Q	I	D	G	H	V	L	I	G	S	S	E	K	A	M	A	A	W	L	A	K	N	G	P	I	A	I	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S	T	T				B	T	T	T	S					T	T	S									T	T															S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	D	A	S	S	F	M	S	Y	K	S	G	V	L	T	A	C	I	G	K	Q	L	N	H	G	V	L	L	V	G	Y	D	M	T	G	E	V	P	Y	W	V	I	K	N	S	W	G	G	D	W	G	E	Q	G	Y	V	R	V	V	M	G	V	N	A	C	L	L	S	E	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				G	G	G	T	T			S	S				S				S														S	S	S	S								S	B		T	T	S	T	B	T	T						S	S	S		G	G	G	T	T	S
	.	.	.	.	.	.	.
Sequence	P	V	S	A	H	V	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)