PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c6nwfB_

Fold library id	PDB Header	Molecule	Title
c6nwfB_	2.06	PDB header: membrane protein	Chain: B: PDB Molecule: halorhodopsin;

Links to external resources
Added to library: Sat Mar 14 08:23:20 2020

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M T Q A W L W I G V I S M A L G S V F F G F G A H N A K N E R W Q I L Y T L N F F I C L I A A G L Y L A M A L G L G V N V I N G R P T Y W V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T
S
T T
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R F V T W F C S T P L L L L D L T F L G R T S L P L T G S L L G A N A Y M L V T G F V A T V T P K P M S Y I W Y I V S C A A Y L A I V Y L L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A Q P Y R I A A E R K H P R S K Q A F R T L V T V H L V L W T L Y P I V W I L S P E G F S T F T Q G S E T M F Y T L L D I A S K V G F G F L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
G G G S T T T T
S

. . . . . . . . . 220 . . .

Sequence S L N T L H T L E Q A T E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	T	Q	A	W	L	W	I	G	V	I	S	M	A	L	G	S	V	F	F	G	F	G	A	H	N	A	K	N	E	R	W	Q	I	L	Y	T	L	N	F	F	I	C	L	I	A	A	G	L	Y	L	A	M	A	L	G	L	G	V	N	V	I	N	G	R	P	T	Y	W	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																												S	S																										T	T		S					T	T					T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	F	V	T	W	F	C	S	T	P	L	L	L	L	D	L	T	F	L	G	R	T	S	L	P	L	T	G	S	L	L	G	A	N	A	Y	M	L	V	T	G	F	V	A	T	V	T	P	K	P	M	S	Y	I	W	Y	I	V	S	C	A	A	Y	L	A	I	V	Y	L	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																					T																										S		T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	Q	P	Y	R	I	A	A	E	R	K	H	P	R	S	K	Q	A	F	R	T	L	V	T	V	H	L	V	L	W	T	L	Y	P	I	V	W	I	L	S	P	E	G	F	S	T	F	T	Q	G	S	E	T	M	F	Y	T	L	L	D	I	A	S	K	V	G	F	G	F	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T											G	G	G																									S	T	T	T	T			S
	.	.	.	.	.	.	.	.	.	220	.	.	.
Sequence	S	L	N	T	L	H	T	L	E	Q	A	T	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T