PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c6nvoA_

Fold library id	PDB Header	Molecule	Title
c6nvoA_	2.20	PDB header: dna binding protein	Chain: A: PDB Molecule: nuclease mpe;

Links to external resources
Added to library: Sat Mar 30 08:22:29 2019

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N Y Q P I E H R G Q A L W L L A D K A I Y W P A R R A L L V A D V H I G K A A S Y G T T E A T L A R L D R L L A E H D C E Q L I I L G D F L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T T G G G T
B T
S
S
S
S B

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence H A R T A R A P A T L A K V E D W R K R H K N L K V V L I R G N H D R N A G D P P A S L D I Q V V D E P W V L E P F A L Q H E P Q P H G T H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S G G G S
T T T T S
S
G G G
S
T T
S S
S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200

Sequence P V L A G H V H P V F V L R G R L R L P C F V I D E Q V S L L P A F G E F T G G W E I T P A S A S R L Y L A G R V W P L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S
S S
S
T T
S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	Y	Q	P	I	E	H	R	G	Q	A	L	W	L	L	A	D	K	A	I	Y	W	P	A	R	R	A	L	L	V	A	D	V	H	I	G	K	A	A	S	Y	G	T	T	E	A	T	L	A	R	L	D	R	L	L	A	E	H	D	C	E	Q	L	I	I	L	G	D	F	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T							T	T	T					G	G	G	T									B	T																						S			S						S		S	B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	H	A	R	T	A	R	A	P	A	T	L	A	K	V	E	D	W	R	K	R	H	K	N	L	K	V	V	L	I	R	G	N	H	D	R	N	A	G	D	P	P	A	S	L	D	I	Q	V	V	D	E	P	W	V	L	E	P	F	A	L	Q	H	E	P	Q	P	H	G	T	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	G	G	G	S														T	T	T	T	S															S			G	G	G							S					T	T					S	S					S	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Sequence	P	V	L	A	G	H	V	H	P	V	F	V	L	R	G	R	L	R	L	P	C	F	V	I	D	E	Q	V	S	L	L	P	A	F	G	E	F	T	G	G	W	E	I	T	P	A	S	A	S	R	L	Y	L	A	G	R	V	W	P	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	S																			S	S							S	S			S							T	T		S	S