PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c6lm1C_

Fold library id	PDB Header	Molecule	Title
c6lm1C_	1.90	PDB header: membrane protein	Chain: C: PDB Molecule: rhodopsin;

Links to external resources
Added to library: Sat Oct 24 08:39:12 2020

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G M T Q L A L I G L W I G F I G M V I G A V I F G Q K A V A M R R K E G M E F P L K S F F I V L W A G A L Y L T M I L G E T V T P V Q T V F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T S T T T T T S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence W G R Y V D W V V T T P V L L L D L G V L A G L R P K L I A G V I A A D I F M I L T G L V A T L E A P P T S Y L W Y I I S C G A F I A I L A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence S L L T E F T A S A A R R N V R V N N L F L K L R N Y L I V L W I C Y P I V W L L G A E A F K I I P T G V E V V I Y A I I D I A A K V G F G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S
S T T T T
S

. . . . . . . . . 220 . . . . . .

Sequence L I L T S A A P E I L A Q A S N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	M	T	Q	L	A	L	I	G	L	W	I	G	F	I	G	M	V	I	G	A	V	I	F	G	Q	K	A	V	A	M	R	R	K	E	G	M	E	F	P	L	K	S	F	F	I	V	L	W	A	G	A	L	Y	L	T	M	I	L	G	E	T	V	T	P	V	Q	T	V	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																															T	T	T	S	T	T	T																						T	T	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	W	G	R	Y	V	D	W	V	V	T	T	P	V	L	L	L	D	L	G	V	L	A	G	L	R	P	K	L	I	A	G	V	I	A	A	D	I	F	M	I	L	T	G	L	V	A	T	L	E	A	P	P	T	S	Y	L	W	Y	I	I	S	C	G	A	F	I	A	I	L	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T																						T																										S		T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	S	L	L	T	E	F	T	A	S	A	A	R	R	N	V	R	V	N	N	L	F	L	K	L	R	N	Y	L	I	V	L	W	I	C	Y	P	I	V	W	L	L	G	A	E	A	F	K	I	I	P	T	G	V	E	V	V	I	Y	A	I	I	D	I	A	A	K	V	G	F	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T							T	T	S																													S	T	T	T	T			S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Sequence	L	I	L	T	S	A	A	P	E	I	L	A	Q	A	S	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	S