PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c6kw3J_

Fold library id	PDB Header	Molecule	Title
c6kw3J_	7.13	PDB header: dna binding protein/dna	Chain: J: PDB Molecule: nuclear protein sth1/nps1;

Links to external resources
Added to library: Sat Nov 16 08:28:01 2019

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence L Q E Q S E L M S T V M N N T P T T V A A L A A V A A A S E T N G T I P K P R S S A Q L E Q L L Y R Y R A I Q N H P K E N K L E I K A I E D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S S G G G
S T T T T T T T T
S S T T T T T T T
S S
S T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T F R N I S R D Q D I Y E T K L D T L R K S I D K G F Q Y D E D L L N K H L V A L Q L L E K D T D V P D Y F G D P D T E I R I S A R I S N R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S
S T T T T
T T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I N E L E R L P A N L G T Y S L D D C L E F I T K D D L S S R M D T F K I K A L V E L K S L K L L T K Q K S I R Q K L I N N V A S Q A H H N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
S
T T G G G T
S S
S
S
T T T T T T T S S S
S S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . .

Sequence I P Y L R D S P F T A A A Q R S V Q I R S K V I V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	L	Q	E	Q	S	E	L	M	S	T	V	M	N	N	T	P	T	T	V	A	A	L	A	A	V	A	A	A	S	E	T	N	G	T	I	P	K	P	R	S	S	A	Q	L	E	Q	L	L	Y	R	Y	R	A	I	Q	N	H	P	K	E	N	K	L	E	I	K	A	I	E	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T			S	S	S	G	G	G		S	T	T	T	T	T	T	T	T									S	S	T	T	T										T	T	T	T		S	S		S	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	F	R	N	I	S	R	D	Q	D	I	Y	E	T	K	L	D	T	L	R	K	S	I	D	K	G	F	Q	Y	D	E	D	L	L	N	K	H	L	V	A	L	Q	L	L	E	K	D	T	D	V	P	D	Y	F	G	D	P	D	T	E	I	R	I	S	A	R	I	S	N	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																						S			S						S													T	T	T	T										T	T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	N	E	L	E	R	L	P	A	N	L	G	T	Y	S	L	D	D	C	L	E	F	I	T	K	D	D	L	S	S	R	M	D	T	F	K	I	K	A	L	V	E	L	K	S	L	K	L	L	T	K	Q	K	S	I	R	Q	K	L	I	N	N	V	A	S	Q	A	H	H	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	S		S							T	T	G	G	G	T				S	S				S		S		T	T	T	T									T	T	T																S	S	S		S	S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Sequence	I	P	Y	L	R	D	S	P	F	T	A	A	A	Q	R	S	V	Q	I	R	S	K	V	I	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S											T	T