PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c6kr4H_

Fold library id	PDB Header	Molecule	Title
c6kr4H_	2.85	PDB header: transferase/protein binding	Chain: H: PDB Molecule: liprin-alpha-3;

Links to external resources
Added to library: Sat Jan 18 08:31:03 2020

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A K L T G P G D K D R R N K R K H E L L E E A C R Q G L P F A A W D G P T V V S W L E L W V G M P A W Y V A A C R A N V K S G A I M A N L S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T S T
G G G
T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D T E I Q R E I G I S N P L H R L K L R L A I Q E M V S L T D M N H E W V G N D W L P S L G L P Q Y R S Y F M E S L V D A R M L D H L N K K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T T
G G G T T
G G G G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence E L R G Q L K M V D S F H R V S L H Y G I M C L K R L N Y D R K D L E R R R D V M V W S N E R V M G W V S T N L T E S G V H G A L L A L D E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
T T T
G G G
T T T T S
S

. . . . . . . . . 220 . . . . . . . . . 230 .

Sequence T F D Y S D L A L L L L L E K E F S N L I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	K	L	T	G	P	G	D	K	D	R	R	N	K	R	K	H	E	L	L	E	E	A	C	R	Q	G	L	P	F	A	A	W	D	G	P	T	V	V	S	W	L	E	L	W	V	G	M	P	A	W	Y	V	A	A	C	R	A	N	V	K	S	G	A	I	M	A	N	L	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S			T	T	S																			T			G	G	G													T	T																S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	T	E	I	Q	R	E	I	G	I	S	N	P	L	H	R	L	K	L	R	L	A	I	Q	E	M	V	S	L	T	D	M	N	H	E	W	V	G	N	D	W	L	P	S	L	G	L	P	Q	Y	R	S	Y	F	M	E	S	L	V	D	A	R	M	L	D	H	L	N	K	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T																																T					T	T		G	G	G							T	T			G	G	G	G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	E	L	R	G	Q	L	K	M	V	D	S	F	H	R	V	S	L	H	Y	G	I	M	C	L	K	R	L	N	Y	D	R	K	D	L	E	R	R	R	D	V	M	V	W	S	N	E	R	V	M	G	W	V	S	T	N	L	T	E	S	G	V	H	G	A	L	L	A	L	D	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	T																					T	T	T											G	G	G													T	T	T	T	S											S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Sequence	T	F	D	Y	S	D	L	A	L	L	L	L	L	E	K	E	F	S	N	L	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S