PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c6k4jA_

Fold library id	PDB Header	Molecule	Title
c6k4jA_	2.70	PDB header: membrane protein	Chain: A: PDB Molecule: cd9 antigen;

Links to external resources
Added to library: Sat May 16 08:40:56 2020

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M P V K G G T K C I K Y L L F G F N F I F W L A G I A V L A I G L W L R F D S Q T K S I F E Q E T N N N N S S F Y T G V Y I L I G A G A L M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T G G G G G T T S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence M L V G F L G C C G A V Q E S Q C M L G L F F G F L L V I F A I E I A A A I W G Y S H K D E V I K E V Q E F Y K D T Y N K L K T K D E P Q R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence E T L K A I H Y A L N C C G L A G G V E Q F I S D I C P K K D V L E S C P D A I K E V F D N K F H I I G A V G I G I A V V M I F G M I F S M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T B
T T T G G G G G G T T
S
S
S
B

. . . . . . . . . 220

Sequence I L C C A I R R N R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	P	V	K	G	G	T	K	C	I	K	Y	L	L	F	G	F	N	F	I	F	W	L	A	G	I	A	V	L	A	I	G	L	W	L	R	F	D	S	Q	T	K	S	I	F	E	Q	E	T	N	N	N	N	S	S	F	Y	T	G	V	Y	I	L	I	G	A	G	A	L	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																						S	T	T	G	G	G	G	G	T	T	S				S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	M	L	V	G	F	L	G	C	C	G	A	V	Q	E	S	Q	C	M	L	G	L	F	F	G	F	L	L	V	I	F	A	I	E	I	A	A	A	I	W	G	Y	S	H	K	D	E	V	I	K	E	V	Q	E	F	Y	K	D	T	Y	N	K	L	K	T	K	D	E	P	Q	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T																												T	T																					T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	E	T	L	K	A	I	H	Y	A	L	N	C	C	G	L	A	G	G	V	E	Q	F	I	S	D	I	C	P	K	K	D	V	L	E	S	C	P	D	A	I	K	E	V	F	D	N	K	F	H	I	I	G	A	V	G	I	G	I	A	V	V	M	I	F	G	M	I	F	S	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	B		T	T	T	G	G	G	G	G	G	T	T			S		S		S			B
	.	.	.	.	.	.	.	.	.	220
Sequence	I	L	C	C	A	I	R	R	N	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T