PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c6jp6B_

Fold library id	PDB Header	Molecule	Title
c6jp6B_	2.70	PDB header: transferase	Chain: B: PDB Molecule: trna (cytidine(34)/guanosine(34)-2'-o)-methyltransferase;

Links to external resources
Added to library: Sat Oct 5 08:21:50 2019

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence R D L Y Y R K A K E Q G Y R A R S A F K L L Q L N D Q F H F L D D P N L K R V V D L C A A P G S W S Q V L S R K L F D E S P S S D K E D R K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S T T T T T
T T S
T T
S
T T
T T T S
G G G
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I V S V D L Q P M S P I P H V T T L Q A D I T H P K T L A R I L K L F G N E K A D F V C S D G A P D V T G L H D L D E Y V Q Q Q L I M S A L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
B T T
S S S T T S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Q L T A C I L K K G G T F V A K I F R G R D I D M L Y S Q L G Y L F D K I V C A K P R S S R G T S L E A F I V C L G Y N P P S N N K L C I S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T T G G G
S S S
T T S

. . . . . . . . . 220 . . . . . . . . . 230 .

Sequence D K L S H W N E E E R N I A E F M A C G S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	R	D	L	Y	Y	R	K	A	K	E	Q	G	Y	R	A	R	S	A	F	K	L	L	Q	L	N	D	Q	F	H	F	L	D	D	P	N	L	K	R	V	V	D	L	C	A	A	P	G	S	W	S	Q	V	L	S	R	K	L	F	D	E	S	P	S	S	D	K	E	D	R	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T		S	S	T	T									T	T	T		T	T	S		T	T								S		T	T												T	T	T	S		G	G	G		S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	V	S	V	D	L	Q	P	M	S	P	I	P	H	V	T	T	L	Q	A	D	I	T	H	P	K	T	L	A	R	I	L	K	L	F	G	N	E	K	A	D	F	V	C	S	D	G	A	P	D	V	T	G	L	H	D	L	D	E	Y	V	Q	Q	Q	L	I	M	S	A	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	S					B	T	T								S	S	S											T	T	S																S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Q	L	T	A	C	I	L	K	K	G	G	T	F	V	A	K	I	F	R	G	R	D	I	D	M	L	Y	S	Q	L	G	Y	L	F	D	K	I	V	C	A	K	P	R	S	S	R	G	T	S	L	E	A	F	I	V	C	L	G	Y	N	P	P	S	N	N	K	L	C	I	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				S	T	T								T	G	G	G										S	S	S		T	T	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Sequence	D	K	L	S	H	W	N	E	E	E	R	N	I	A	E	F	M	A	C	G	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S