PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c6j9eA_

Fold library id	PDB Header	Molecule	Title
c6j9eA_	3.41	PDB header: transcription	Chain: A: PDB Molecule: dna-directed rna polymerase subunit alpha;

Links to external resources
Added to library: Sat Jul 20 08:21:14 2019

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence P R G P Q I E R L T D N R A K V V I E P L E R G Y G H T L G N A L R R V L L S S I P G F A I T E V E I D G V L H E Y T T V E G L Q E D V L D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S
T T
T
S S
S T T
T T B S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V L L N L K D V A I R M H S G D S A T L S L S K Q G P G T V T A A D I R T D H N V E I I N G D H V I C H L T K D T A L N M R L K I E R G F G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S
S
S S G G G
S S
S
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Y Q P A A A R G R L M L D A S F S P V R R V A Y A V E A A R V E Q R T D L D K L V I D I E T N G T I D A E E A V R T A A D I L S D Q L S V F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S S S
S S S
T T S

.

Sequence G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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Phyre2 is part of Genome3D

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	P	R	G	P	Q	I	E	R	L	T	D	N	R	A	K	V	V	I	E	P	L	E	R	G	Y	G	H	T	L	G	N	A	L	R	R	V	L	L	S	S	I	P	G	F	A	I	T	E	V	E	I	D	G	V	L	H	E	Y	T	T	V	E	G	L	Q	E	D	V	L	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S		S	S											T	T																T												S	S			S	T	T				T	T	B	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	L	L	N	L	K	D	V	A	I	R	M	H	S	G	D	S	A	T	L	S	L	S	K	Q	G	P	G	T	V	T	A	A	D	I	R	T	D	H	N	V	E	I	I	N	G	D	H	V	I	C	H	L	T	K	D	T	A	L	N	M	R	L	K	I	E	R	G	F	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S					S	S		S										S	S					G	G	G					S	S								S							S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Y	Q	P	A	A	A	R	G	R	L	M	L	D	A	S	F	S	P	V	R	R	V	A	Y	A	V	E	A	A	R	V	E	Q	R	T	D	L	D	K	L	V	I	D	I	E	T	N	G	T	I	D	A	E	E	A	V	R	T	A	A	D	I	L	S	D	Q	L	S	V	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S																											S	S	S	S													S	S	S																	T	T	S
	.
Sequence	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)