PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c6j5ib_

Fold library id	PDB Header	Molecule	Title
c6j5ib_	3.34	PDB header: membrane protein	Chain: B: PDB Molecule: atp synthase subunit alpha, mitochondrial;

Links to external resources
Added to library: Sat Jun 29 08:32:35 2019

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence P P L P E H G G K V R L G L I P E E F F Q F L Y P K T G V T G P Y V L G T G L I L Y L L S K E I Y V I T A E T F S A I S T I G V L V Y I V K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S
S T T G G G T T
S S
S T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence K Y G A S I G A F A D K L N E Q K I A Q L E E V K Q A S I K Q I Q D A I D L E K S Q Q A L V Q K R H Y L F D V Q R N N I A M A L E V T Y R E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . .

Sequence R L H R V Y K E I K N R L D Y H I S V Q N M M R Q K E Q E H M I R W V E K H V V Q S I S A Q Q E K E T I A K C I A D L K L L A K K A Q A Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	P	P	L	P	E	H	G	G	K	V	R	L	G	L	I	P	E	E	F	F	Q	F	L	Y	P	K	T	G	V	T	G	P	Y	V	L	G	T	G	L	I	L	Y	L	L	S	K	E	I	Y	V	I	T	A	E	T	F	S	A	I	S	T	I	G	V	L	V	Y	I	V	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																													T	T	S	S			S					T	T					G	G	G	T	T			S	S		S	T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	K	Y	G	A	S	I	G	A	F	A	D	K	L	N	E	Q	K	I	A	Q	L	E	E	V	K	Q	A	S	I	K	Q	I	Q	D	A	I	D	L	E	K	S	Q	Q	A	L	V	Q	K	R	H	Y	L	F	D	V	Q	R	N	N	I	A	M	A	L	E	V	T	Y	R	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	T																				T																	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Sequence	R	L	H	R	V	Y	K	E	I	K	N	R	L	D	Y	H	I	S	V	Q	N	M	M	R	Q	K	E	Q	E	H	M	I	R	W	V	E	K	H	V	V	Q	S	I	S	A	Q	Q	E	K	E	T	I	A	K	C	I	A	D	L	K	L	L	A	K	K	A	Q	A	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																													S		S	S