PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c6ifnF_

Fold library id	PDB Header	Molecule	Title
c6ifnF_	2.90	PDB header: rna binding protein	Chain: F: PDB Molecule: type iii-a crispr-associated ramp protein csm3;

Links to external resources
Added to library: Sat Dec 22 09:02:11 2018

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M T F A K I K F S A Q I R L E T G L H I G G S D A F A A I G A I D S P V I K D P I T N L P I I P G S S L K G K M R T L L A K V Y N E K V A E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
B
S T T S
S S S S
B
T T T
B
S S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence K P S D D S D I L S R L F G N S K D K R F K M G R L I F R D A F L S N A D E L D S L G V R S Y T E V K F E N T I D R I T A E A N P R Q I E R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S G G G S
T T
T T T S S
S
T T
S
S
T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A I R N S T F D F E L I Y E I T D E N E N Q V E E D F K V I R D G L K L L E L D Y L G G S G S R G Y G K V A F E N L K A T T V F G N Y D V K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S
T S
S S S G G G T
S

. . . . . . . . . 220

Sequence T L N E L L T A E V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	T	F	A	K	I	K	F	S	A	Q	I	R	L	E	T	G	L	H	I	G	G	S	D	A	F	A	A	I	G	A	I	D	S	P	V	I	K	D	P	I	T	N	L	P	I	I	P	G	S	S	L	K	G	K	M	R	T	L	L	A	K	V	Y	N	E	K	V	A	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															S	S		B						S	T	T	S		S	S	S	S						B		T	T	T			B																					S	S			S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	K	P	S	D	D	S	D	I	L	S	R	L	F	G	N	S	K	D	K	R	F	K	M	G	R	L	I	F	R	D	A	F	L	S	N	A	D	E	L	D	S	L	G	V	R	S	Y	T	E	V	K	F	E	N	T	I	D	R	I	T	A	E	A	N	P	R	Q	I	E	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	G	G	G	S											T	T		T	T	T	S	S		S										T								T		S		S											T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	I	R	N	S	T	F	D	F	E	L	I	Y	E	I	T	D	E	N	E	N	Q	V	E	E	D	F	K	V	I	R	D	G	L	K	L	L	E	L	D	Y	L	G	G	S	G	S	R	G	Y	G	K	V	A	F	E	N	L	K	A	T	T	V	F	G	N	Y	D	V	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T												S	S																						T	S			S	S	S	G	G	G	T																S
	.	.	.	.	.	.	.	.	.	220
Sequence	T	L	N	E	L	L	T	A	E	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)