PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c6iacB_

Fold library id	PDB Header	Molecule	Title
c6iacB_	3.90	PDB header: structural protein	Chain: B: PDB Molecule: lower collar protein;

Links to external resources
Added to library: Sat Nov 9 08:23:49 2019

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence R Y T M T L Y D F I K S E L I K K G F N E F V N D N K L T F Y D D E F Q F M Q K M L K F D K D V L A I V N E K V F K G F S L K D E L S D L L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T
S S S S S S S
S S
T T T S T
T S T T
S S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence F K K S F T I H F L D R E I N R Q T V E A F G M Q V I T V C I T H E D Y L N V V Y S S S E V E K Y L Q S Q G F T E H N E D T T S N T D E T S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S T T S
S S S S T T
T
S
S S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence N Q N A T S L D N S T G N N T I D N G K T V N K S S N E S N Q N A K R N Q N Q K G N A K G T Q F T K Q Y L I D N I D K A Y D L R K K I L N E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T T T T

. . . . . . . . . 220

Sequence F D K K C F L Q I W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	R	Y	T	M	T	L	Y	D	F	I	K	S	E	L	I	K	K	G	F	N	E	F	V	N	D	N	K	L	T	F	Y	D	D	E	F	Q	F	M	Q	K	M	L	K	F	D	K	D	V	L	A	I	V	N	E	K	V	F	K	G	F	S	L	K	D	E	L	S	D	L	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S											T	T			S	S	S	S	S	S	S			S	S		T	T	T	S								T												T	S	T	T				S	S	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	F	K	K	S	F	T	I	H	F	L	D	R	E	I	N	R	Q	T	V	E	A	F	G	M	Q	V	I	T	V	C	I	T	H	E	D	Y	L	N	V	V	Y	S	S	S	E	V	E	K	Y	L	Q	S	Q	G	F	T	E	H	N	E	D	T	T	S	N	T	D	E	T	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T	S	T	T	S			S	S	S	S	T	T			T								S					S	S					S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	N	Q	N	A	T	S	L	D	N	S	T	G	N	N	T	I	D	N	G	K	T	V	N	K	S	S	N	E	S	N	Q	N	A	K	R	N	Q	N	Q	K	G	N	A	K	G	T	Q	F	T	K	Q	Y	L	I	D	N	I	D	K	A	Y	D	L	R	K	K	I	L	N	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																																						T	T					T	T	T	T	T
	.	.	.	.	.	.	.	.	.	220
Sequence	F	D	K	K	C	F	L	Q	I	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	S