PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c6hwwA_

Fold library id	PDB Header	Molecule	Title
c6hwwA_	6.60	PDB header: viral protein	Chain: A: PDB Molecule: putative gag polyprotein;

Links to external resources
Added to library: Sat Dec 8 08:27:57 2018

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S S S D L Y N W K N N N P S F S E D P G K L T A L I E S V L T T H Q P T W D D C Q Q L L G T L L T G E E K Q R V L L E A R K A V R G N D G R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T S
T T T
T
S
T
B
T T S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P T Q L P N E V D A A F P L E R P D W D Y T T Q R G R N H L V L Y R Q L L L A G M Q N A G R S P T N L A K V K G I T Q G P N E S P S A F L E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B
S
S S
T T S T T T T T T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence R L K E A Y R R Y T P Y D P E D P G Q E T N V S M S F I W Q S A P D I G R K L E R L E D L K S K T L G D L V R E A E K I F N K R E T P E E R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
T T S G G G S
T
T T G G G
S S

. . . . . . . . . 220 .

Sequence E E R I R R E T E E K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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Phyre2 is part of Genome3D

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	S	S	D	L	Y	N	W	K	N	N	N	P	S	F	S	E	D	P	G	K	L	T	A	L	I	E	S	V	L	T	T	H	Q	P	T	W	D	D	C	Q	Q	L	L	G	T	L	L	T	G	E	E	K	Q	R	V	L	L	E	A	R	K	A	V	R	G	N	D	G	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	S			T	T	T																T															S															T		B		T	T	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	T	Q	L	P	N	E	V	D	A	A	F	P	L	E	R	P	D	W	D	Y	T	T	Q	R	G	R	N	H	L	V	L	Y	R	Q	L	L	L	A	G	M	Q	N	A	G	R	S	P	T	N	L	A	K	V	K	G	I	T	Q	G	P	N	E	S	P	S	A	F	L	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	B											S		S	S						T	T	S																							T	T	T	T	T						T					T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	R	L	K	E	A	Y	R	R	Y	T	P	Y	D	P	E	D	P	G	Q	E	T	N	V	S	M	S	F	I	W	Q	S	A	P	D	I	G	R	K	L	E	R	L	E	D	L	K	S	K	T	L	G	D	L	V	R	E	A	E	K	I	F	N	K	R	E	T	P	E	E	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S	S			T	T	S	G	G	G												S										T		T	T	G	G	G																S	S
	.	.	.	.	.	.	.	.	.	220	.
Sequence	E	E	R	I	R	R	E	T	E	E	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)